CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZKSCAN2
(
Gorilla gorilla
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSGGOG00000004769
T076457_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.992
0.992
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.752
0.752
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.752
0.752
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.752
0.752
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000004672
MADF
298
359
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHMLEPCAFFEDM
ENSGGOP00000004672
MADF
452
519
TRFYEALQACHRKSKLYGAVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDAL
ENSGGOP00000004672
C2H2 ZF
712
734
YKCGVCGKCFGRSRSLIRHQRIH
ENSGGOP00000004672
C2H2 ZF
740
762
FKCLDCGKSFNDSSNFGAHQRIH
ENSGGOP00000004672
C2H2 ZF
768
790
YRCGECGKCFSQSSSLIIHQRTH
ENSGGOP00000004672
C2H2 ZF
796
818
YQCGECGKSFTNSSHFSTHRRVH
ENSGGOP00000004672
C2H2 ZF
824
846
YKCVDCEKSFSNCTRFREHRRIH
ENSGGOP00000004672
C2H2 ZF
852
874
YGCAQCGKRFSKSSVLTKHREVH
ENSGGOP00000028290
MADF
359
420
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHMLEPCAFFEDM
ENSGGOP00000028290
MADF
513
580
TRFYEALQACHRKSKLYGAVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDAL
ENSGGOP00000028290
C2H2 ZF
773
795
YKCGVCGKCFGRSRSLIRHQICH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Gorilla gorilla
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy