CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZKSCAN2
(
Monodelphis domestica
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSMODG00000015452
T076463_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.872
0.872
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.732
0.732
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.732
0.732
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.732
0.732
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000019287
MADF
363
428
FYETLRACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHMQEPCAFYEEMDAL
ENSMODP00000019287
MADF
517
583
SRFYEALQACHRKSKVYGAVAEQLQEYGFLRTPEQCRTKFKSLQKSYRKVRNGSMLESCAFYEELDA
ENSMODP00000019287
C2H2 ZF
776
798
YKCNVCGKCFGRSRSLIRHQRIH
ENSMODP00000019287
C2H2 ZF
804
826
FKCLECGKSFNDSSNFGAHQRIH
ENSMODP00000019287
C2H2 ZF
832
854
YKCSVCEKCFSQSSSLIIHQRTH
ENSMODP00000019287
C2H2 ZF
860
882
YQCSECGKSFTNSSHFSAHRRIH
ENSMODP00000019287
C2H2 ZF
888
910
YKCVNCEKSFSNCTQFREHQRTH
ENSMODP00000019287
C2H2 ZF
916
938
YDCSHCGKSFSKSSALTKHRGVH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Monodelphis domestica
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy