CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZSCAN29
(
Monodelphis domestica
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSMODG00000017820
T076466_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.963
0.963
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.963
0.963
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.963
0.963
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.731
0.731
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000022214
MADF
310
377
TEFYEALRNCHRNSQVYGAVAERLREYGFLRTLEQCRTKFKGLQKSYRKVKGGHPPETCPFFEEMEAL
ENSMODP00000022214
MADF
471
538
TQFYEALRNCHRNSQLYGAVAERLWEYGFLRTPEQCRTKFKSLQTSYRKVKSGHAPETCPFFEEMDAL
ENSMODP00000022214
C2H2 ZF
735
757
YKCGDCGKSFSRSARLIRHRRIH
ENSMODP00000022214
C2H2 ZF
763
785
YKCLDCGKSFRDSSNFITHRRIH
ENSMODP00000022214
C2H2 ZF
791
813
YQCGECGKRFNQSSSLIIHQRTH
ENSMODP00000022214
C2H2 ZF
819
841
YQCEECGKSFNNSSHFSAHRRIH
ENSMODP00000022214
C2H2 ZF
847
869
HVCPDCGKSFSKSSDLRAHHRTH
ENSMODP00000022214
C2H2 ZF
875
897
YGCHECGKCFSKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Monodelphis domestica
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy