CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZSCAN29
(
Otolemur garnettii
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSOGAG00000000128
T076475_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.978
0.978
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.978
0.978
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.978
0.978
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.731
0.731
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000000112
MADF
83
150
TEFYEALRNCHRNSQVYGAVAERLREYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEEMEAL
ENSOGAP00000000112
MADF
247
314
TQFYEALQNCHRNSQLYGAVAERLWEHGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
ENSOGAP00000000112
C2H2 ZF
499
521
YKCADCGKSFSRSARLIRHRRIH
ENSOGAP00000000112
C2H2 ZF
527
549
YKCLDCGKSFRDSSNFITHRRIH
ENSOGAP00000000112
C2H2 ZF
555
577
YQCGECGKRFNQSSSLIIHQRTH
ENSOGAP00000000112
C2H2 ZF
583
605
YQCEECGKSFNNSSHFSAHRRIH
ENSOGAP00000000112
C2H2 ZF
611
633
HVCPDCGKSFSKSSDLRAHHRTH
ENSOGAP00000000112
C2H2 ZF
639
661
YRCYDCGKCFTKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Otolemur garnettii
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy