CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZKSCAN2
(
Pan troglodytes
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSPTRG00000007906
T076485_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
1.000
1.000
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.752
0.752
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.752
0.752
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.752
0.752
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPTRP00000013511
MADF
361
422
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHMLEPCAFFEDM
ENSPTRP00000013511
MADF
515
582
TRFYEALQACHRKSKLYGAVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDAL
ENSPTRP00000013511
C2H2 ZF
775
797
YKCGVCGKCFGRSRSLIRHQRIH
ENSPTRP00000013511
C2H2 ZF
803
825
FKCLDCGKSFNDSSNFGAHQRIH
ENSPTRP00000013511
C2H2 ZF
831
853
YRCGECGKCFSQSSSLIIHQRTH
ENSPTRP00000013511
C2H2 ZF
859
881
YQCGECGKSFTNSSHFSAHRRVH
ENSPTRP00000013511
C2H2 ZF
887
909
YKCVDCEKSFNNCTRFREHRRIH
ENSPTRP00000013511
C2H2 ZF
915
937
YGCAQCGKRFSKSSVLTKHREVH
ENSPTRP00000060648
MADF
361
422
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHMLEPCAFFEDM
ENSPTRP00000060648
MADF
515
582
TRFYEALQACHRKSKLYGAVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDAL
ENSPTRP00000060648
C2H2 ZF
775
797
YKCGVCGKCFGRSRSLIRHQRIH
ENSPTRP00000060648
C2H2 ZF
803
825
FKCLDCGKSFNDSSNFGAHQRIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Pan troglodytes
TFs
67 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy