CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Zscan29
(
Rattus norvegicus
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSRNOG00000012419
T076488_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.876
0.876
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.876
0.876
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.876
0.876
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000034442
MADF
244
318
ETRTLLAILSQTEFYECHRNSQVYGAIAERLREYGFLVSLEQCRTKFKGLQKSYRKVKSGHPPDTCPFFEEMEAL
ENSRNOP00000034442
MADF
413
479
QFYEALQNCHFNSHLYRAVAERLWEYGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
ENSRNOP00000034442
C2H2 ZF
657
679
YKCADCGISFSRSVRLIRHQRIH
ENSRNOP00000034442
C2H2 ZF
685
707
YKCLDCGKGFRDSSNFITHRRIH
ENSRNOP00000034442
C2H2 ZF
713
735
YQCGECGKRFNQSSSLIIHRRTH
ENSRNOP00000034442
C2H2 ZF
741
763
YQCEECGKSFSNSSHFSAHRRTH
ENSRNOP00000034442
C2H2 ZF
769
791
HVCPDCGKSFSKSSGLRAHHRTH
ENSRNOP00000034442
C2H2 ZF
797
819
YGCHDCGKCFSKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Rattus norvegicus
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy