Zkscan2 (Rattus norvegicus)
C2H2 ZF,MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg) 		IPR007087
IPR006578 		ENSRNOG00000024245 T076489_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZKSCAN2
M07562_2.00 		Homo sapiens
RRRRRMMAC
GTKTYYYYY		 ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData 		0.958 0.958
ZSCAN29
M04384_2.00 		Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK		 SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX 		0.744 0.744
ZSCAN29
M08271_2.00 		Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR		 ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE 		0.744 0.744
ZSCAN29
M04385_2.00 		Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK		 SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX 		0.744 0.744
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000020281 MADF 355 416
ENSRNOP00000020281 MADF 508 575
ENSRNOP00000020281 C2H2 ZF 768 790
ENSRNOP00000020281 C2H2 ZF 796 818
ENSRNOP00000020281 C2H2 ZF 824 846
ENSRNOP00000020281 C2H2 ZF 852 874
ENSRNOP00000020281 C2H2 ZF 880 902
ENSRNOP00000020281 C2H2 ZF 908 930

Links

Other C2H2 ZF,MADF family TFs
Other Rattus norvegicus TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Zkscan2 Mus musculus ENSMUSG00000030757 I 0.969
ENSPPYG00000007207 Pongo abelii ENSPPYG00000007207 I 0.958
ZKSCAN2 Pan troglodytes ENSPTRG00000007906 I 0.958
ZKSCAN2 Homo sapiens ENSG00000155592 D 0.958
ENSCSAG00000006472 Chlorocebus sabaeus ENSCSAG00000006472 I 0.954
ENSPANG00000007624 Papio anubis ENSPANG00000007624 I 0.954
ENSMICG00000001583 Microcebus murinus ENSMICG00000001583 I 0.954
ENSNLEG00000011727 Nomascus leucogenys ENSNLEG00000011727 I 0.954
ENSP00000331626 Macaca fascicularis ENSP00000331626 I 0.954
ENSSTOG00000000417 Ictidomys tridecemlineatus ENSSTOG00000000417 I 0.950
ZKSCAN2 Gorilla gorilla ENSGGOG00000004769 I 0.950
ENSTSYG00000009836 Tarsius syrichta ENSTSYG00000009836 I 0.950
ZKSCAN2 Callithrix jacchus ENSCJAG00000020749 I 0.950
ZKSCAN2 Canis familiaris ENSCAFG00000017477 I 0.950
ZKSCAN2 Sus scrofa ENSSSCG00000007823 I 0.947
ENSSSCG00000007824 Sus scrofa ENSSSCG00000007824 I 0.947
ENSAMEG00000006980 Ailuropoda melanoleuca ENSAMEG00000006980 I 0.947
ZKSCAN2 Choloepus hoffmanni ENSCHOG00000013904 I 0.943
ZKSCAN2 Tursiops truncatus ENSTTRG00000015263 I 0.939
ZKSCAN2 Dasypus novemcinctus ENSDNOG00000044830 I 0.935
ZKSCAN2 Loxodonta africana ENSLAFG00000007287 I 0.931
ENSCPOG00000005222 Cavia porcellus ENSCPOG00000005222 I 0.931
ZKSCAN2 Sorex araneus ENSSARG00000003883 I 0.927
ZKSCAN2 Procavia capensis ENSPCAG00000014144 I 0.912
ZKSCAN2 Bos taurus ENSBTAG00000011162 I 0.908
ENSOARG00000018575 Ovis aries ENSOARG00000018575 I 0.901
ZKSCAN2 Monodelphis domestica ENSMODG00000015452 I 0.853
ENSSHAG00000013237 Sarcophilus harrisii ENSSHAG00000013237 I 0.840
ZSCAN29 Dasypus novemcinctus ENSDNOG00000018427 I 0.752
ENSPPYG00000006412 Pongo abelii ENSPPYG00000006412 I 0.748
ZSCAN29 Felis catus ENSFCAG00000002712 I 0.748
ZSCAN29 Otolemur garnettii ENSOGAG00000000128 I 0.748
ZSCAN29 Pan troglodytes ENSPTRG00000006992 I 0.748
ZSCAN29 Gorilla gorilla ENSGGOG00000002879 I 0.748
ZSCAN29 Tursiops truncatus ENSTTRG00000016234 I 0.744
ENSSHAG00000012821 Sarcophilus harrisii ENSSHAG00000012821 I 0.744
ENSSTOG00000006892 Ictidomys tridecemlineatus ENSSTOG00000006892 I 0.744
ENSMPUG00000010249 Mustela putorius furo ENSMPUG00000010249 I 0.744
ZSCAN29 Choloepus hoffmanni ENSCHOG00000009706 I 0.744
ZSCAN29 Callithrix jacchus ENSCJAG00000002903 I 0.744
ZSCAN29 Homo sapiens ENSG00000140265 D 0.744
ENSNLEG00000004938 Nomascus leucogenys ENSNLEG00000004938 I 0.744
ZSCAN29 Equus caballus ENSECAG00000012289 I 0.744
ZSCAN29 Microcebus murinus ENSMICG00000010051 I 0.744
ZSCAN29 Canis familiaris ENSCAFG00000012056 I 0.740
Myotis_brandtii_ZSCAN29_10025802 Myotis brandtii Myotis_brandtii_ZSCAN29_10025802 I 0.740
ENSSSCG00000004709 Sus scrofa ENSSSCG00000004709 I 0.740
ZSCAN29 Loxodonta africana ENSLAFG00000001195 I 0.740
ZSCAN29 Monodelphis domestica ENSMODG00000017820 I 0.740
ENSPANG00000018475 Papio anubis ENSPANG00000018475 I 0.737
ZSCAN29 Macaca mulatta ENSMMUG00000017070 I 0.733
Zscan29 Mus musculus ENSMUSG00000050619 I 0.733
ENSCSAG00000009079 Chlorocebus sabaeus ENSCSAG00000009079 I 0.733
ENSP00000380174 Macaca fascicularis ENSP00000380174 I 0.733
ENSAMEG00000015432 Ailuropoda melanoleuca ENSAMEG00000015432 I 0.731
ENSTSYG00000004828 Tarsius syrichta ENSTSYG00000004828 I 0.728
ZSCAN29 Bos taurus ENSBTAG00000014478 I 0.725
ENSBTAP00000014826-D2 Bos grunniens ENSBTAP00000014826-D2 I 0.725
ZSCAN29 Erinaceus europaeus ENSEEUG00000006869 I 0.714
ZSCAN29 Cavia porcellus ENSCPOG00000001782 I 0.714
ENSOANG00000022313 Ornithorhynchus anatinus ENSOANG00000022313 I 0.706
Zscan29 Rattus norvegicus ENSRNOG00000012419 I 0.702