CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Zkscan2
(
Rattus norvegicus
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSRNOG00000024245
T076489_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.958
0.958
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.744
0.744
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.744
0.744
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.744
0.744
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000020281
MADF
355
416
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHMLEPCAFFEDM
ENSRNOP00000020281
MADF
508
575
TRFYEALQACHRKSKLYGVVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDAL
ENSRNOP00000020281
C2H2 ZF
768
790
YKCGVCGKCFGRSRSLIRHQRIH
ENSRNOP00000020281
C2H2 ZF
796
818
FKCLDCGKSFNDSSNFGAHLRIH
ENSRNOP00000020281
C2H2 ZF
824
846
YRCRECGKCFSQSSSLIIHQRTH
ENSRNOP00000020281
C2H2 ZF
852
874
YQCEECGKSFTNSSHFSAHRRAH
ENSRNOP00000020281
C2H2 ZF
880
902
YKCGDCEKSFNNCTRFREHRRIH
ENSRNOP00000020281
C2H2 ZF
908
930
YTCAQCGKHFNKSSFLTKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Rattus norvegicus
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy