CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZKSCAN2
(
Sorex araneus
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSSARG00000003883
T076490_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.966
0.966
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.748
0.748
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.748
0.748
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.748
0.748
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSARP00000003508
MADF
364
425
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHLLEPCAFFEDM
ENSSARP00000003508
MADF
518
585
THFYEALQACHRKSKLYGAVAEQLRECGYLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDAL
ENSSARP00000003508
C2H2 ZF
778
800
YKCSVCGKCFGRSRSLIRHQRIH
ENSSARP00000003508
C2H2 ZF
805
827
FKCLDCGKSFNDSSNFGAHQRIH
ENSSARP00000003508
C2H2 ZF
833
855
YRCEECGKCFSQSSSLIIHQRTH
ENSSARP00000003508
C2H2 ZF
861
883
YQCGECGKSFTNSSHFSAHRRVH
ENSSARP00000003508
C2H2 ZF
889
911
YKCVDCEKSFSNCTRFREHRRMH
ENSSARP00000003508
C2H2 ZF
917
939
YGCGQCGKRFSKSSVLAKHREVH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Sorex araneus
TFs
60 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy