CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSHAG00000012821
(
Sarcophilus harrisii
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSSHAG00000012821
T076492_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.974
0.974
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.974
0.974
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.974
0.974
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.735
0.735
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSHAP00000015023
MADF
263
330
TEFYEALRNCHRNSQVYGAVAERLREYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEEMEAL
ENSSHAP00000015023
MADF
429
496
TQFYEALRNCHRNSQLYGAVAERLWEYGFLRTPEQCRTKFKSLQTSYRKVKSGHAPETCPFFEEMDAL
ENSSHAP00000015023
C2H2 ZF
694
716
YTCGDCGKSFSRSARLIRHRRIH
ENSSHAP00000015023
C2H2 ZF
722
744
YKCLDCGKSFRDSSNFITHRRIH
ENSSHAP00000015023
C2H2 ZF
750
772
YQCGECGKRFNQSSSLIIHQRTH
ENSSHAP00000015023
C2H2 ZF
778
800
YQCEECGKSFNNSSHFSAHRRIH
ENSSHAP00000015023
C2H2 ZF
806
828
HVCPDCGKSFSKSSDLRAHHRTH
ENSSHAP00000015023
C2H2 ZF
834
856
YGCHECGKCFSKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Sarcophilus harrisii
TFs
66 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy