CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSSCG00000007824
(
Sus scrofa
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSSSCG00000007824
T076496_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.981
0.981
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.749
0.749
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.749
0.749
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.749
0.749
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000008352
MADF
229
291
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHVLEPCAFFEDMD
ENSSSCP00000008352
MADF
383
450
TRFYEALQACHRKSKLYGAVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDAL
ENSSSCP00000008352
C2H2 ZF
643
665
YKCSVCGKCFGRSRSLIRHQRIH
ENSSSCP00000008352
C2H2 ZF
671
693
FKCLDCGKSFNDSSNFGAHQRIH
ENSSSCP00000008352
C2H2 ZF
699
721
YRCGECGKCFSQSSSLIIHQRTH
ENSSSCP00000008352
C2H2 ZF
727
749
YQCGECGKSFTNSSHFSAHRRVH
ENSSSCP00000008352
C2H2 ZF
755
777
YKCADCEKSFNNCTRFREHRRIH
ENSSSCP00000008352
C2H2 ZF
783
805
YGCAQCGKRFSKSSVLAKHREVH
ENSSSCP00000028086
MADF
229
291
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHVLEPCAFFEDMD
ENSSSCP00000028086
MADF
383
450
TRFYEALQACHRKSKLYGAVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDAL
ENSSSCP00000028086
C2H2 ZF
643
665
YKCSVCGKCFGRSRSLIRHQRIH
ENSSSCP00000028086
C2H2 ZF
671
693
FKCLDCGKSFNDSSNFGAHQRIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Sus scrofa
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy