CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSTOG00000000417
(
Ictidomys tridecemlineatus
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSSTOG00000000417
T076497_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.989
0.989
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.748
0.748
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.748
0.748
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.748
0.748
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000000374
MADF
363
424
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHLLEPCAFFEDM
ENSSTOP00000000374
MADF
517
584
TRFYEALQACHRKSKLYGAVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDAL
ENSSTOP00000000374
C2H2 ZF
777
799
YKCSVCGKCFGRSRSLIRHQRIH
ENSSTOP00000000374
C2H2 ZF
805
827
FKCLDCGKSFNDSSNFGAHQRIH
ENSSTOP00000000374
C2H2 ZF
833
855
YRCTECGKCFSQSSSLIIHQRTH
ENSSTOP00000000374
C2H2 ZF
861
883
YQCGECGKSFTNSSHFSAHRRVH
ENSSTOP00000000374
C2H2 ZF
889
911
YKCVDCEKSFNNCTRFREHRRIH
ENSSTOP00000000374
C2H2 ZF
917
939
YGCAQCGKRFSKSSVLTKHREVH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Ictidomys tridecemlineatus
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy