CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSTOG00000006892
(
Ictidomys tridecemlineatus
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSSTOG00000006892
T076498_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.970
0.970
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.970
0.970
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.970
0.970
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.735
0.735
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000006164
MADF
257
324
TEFYEALQNCHRNSQVYGCVAERLQEYGFFRTLEQCRTKFKGLQKSYRKVKSGHPPATCPFFEEMEAL
ENSSTOP00000006164
MADF
453
520
TQFYEALRNCHRNSQLYGAVAERLWEYGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCAFFEEMDAL
ENSSTOP00000006164
C2H2 ZF
706
728
YKCADCGKSFSRSARLIRHQRIH
ENSSTOP00000006164
C2H2 ZF
734
756
YKCLDCGKSFRDSSNFITHRRIH
ENSSTOP00000006164
C2H2 ZF
762
784
YQCGECGKRFNQSSSLIIHQRTH
ENSSTOP00000006164
C2H2 ZF
790
812
YQCEECGKSFNNSSHFSAHRRIH
ENSSTOP00000006164
C2H2 ZF
818
840
HVCPDCGKSFSKSSDLRAHHRTH
ENSSTOP00000006164
C2H2 ZF
846
868
YGCHDCGKCFSKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Ictidomys tridecemlineatus
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy