CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZSCAN29
(
Tursiops truncatus
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSTTRG00000016234
T076503_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.985
0.985
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.985
0.985
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.985
0.985
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.735
0.735
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTTRP00000015390
MADF
261
328
TEFYEALRNCHRNSQVYGAVAERLREYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEEMEAL
ENSTTRP00000015390
MADF
423
490
TQFYEALQNCHRNSQLYGAVAERLWEYGFLRTPEQCRTKFKSLHTSYRKVKNGQAPETCPFFEEMDAL
ENSTTRP00000015390
C2H2 ZF
675
697
YKCADCGKSFSRSARLIRHRRIH
ENSTTRP00000015390
C2H2 ZF
703
725
YKCLDCGKSFRDSSNFITHRRIH
ENSTTRP00000015390
C2H2 ZF
731
753
YQCGECGKRFNQSSSLIIHQRTH
ENSTTRP00000015390
C2H2 ZF
759
781
YQCEECGKSFNNSSHFSAHRRIH
ENSTTRP00000015390
C2H2 ZF
787
809
HVCPDCGKSFSKSSDLRAHHRTH
ENSTTRP00000015390
C2H2 ZF
815
837
YGCHDCGKCFSKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Tursiops truncatus
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy