CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Myotis_brandtii_ZSCAN29_10025802
(
Myotis brandtii
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
Myotis_brandtii_ZSCAN29_10025802
T076585_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.981
0.981
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.981
0.981
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.981
0.981
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.730
0.730
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Myotis_brandtii_ZSCAN29_10025802
MADF
143
209
EFYAALRNCHRNSQVYGAVAERLREYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEEMEAL
Myotis_brandtii_ZSCAN29_10025802
MADF
306
373
TQFYEALRNCHRNSQLYGAVAERLWEYGFLRTPEQCRTKFKSLQTSYRKVKNGQAAETCPFFEEMDAL
Myotis_brandtii_ZSCAN29_10025802
C2H2 ZF
559
581
YKCADCGKSFSRSARLIRHRRIH
Myotis_brandtii_ZSCAN29_10025802
C2H2 ZF
587
609
YKCLDCGKSFRDSSNFITHRRIH
Myotis_brandtii_ZSCAN29_10025802
C2H2 ZF
615
637
YQCSECGKRFNQSSSLIIHQRTH
Myotis_brandtii_ZSCAN29_10025802
C2H2 ZF
643
665
YQCEECGKSFNNSSHFSAHRRIH
Myotis_brandtii_ZSCAN29_10025802
C2H2 ZF
671
693
HVCPDCGKSFSKSSDLRAHHRTH
Myotis_brandtii_ZSCAN29_10025802
C2H2 ZF
699
721
YGCHDCGKCFSKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Myotis brandtii
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy