CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OLONG_006294
(
Oryza longistaminata
)
C2H2 ZF,MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF01429 (MBD)
IPR007087
IPR001739
OLONG_006294
T076640_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OLONG_006294-R1
MBD
110
172
GDHLPSGWRLQLGIKRKDRKAWVNCFSYVSPKGQSFATCQEVSAYLMSLLGYPEFKTDNIEYG
OLONG_006294-R1
C2H2 ZF
229
252
YECQQCNSTFHGQSAYAHHLITFH
OLONG_006294-R1
C2H2 ZF
278
300
FECPVCNKTFEEQSRYFGHVGSH
OLONG_006294-R2
MBD
110
172
GDHLPSGWRLQLGIKRKDRKAWVNCFSYVSPKGQSFATCQEVSAYLMSLLGYPEFKTDNIEYG
OLONG_006294-R2
C2H2 ZF
229
252
YECQQCNSTFHGQSAYAHHLITFH
OLONG_006294-R2
C2H2 ZF
278
300
FECPVCNKTFEEQSRYFGHVGSH
OLONG_006294-R3
MBD
110
172
GDHLPSGWRLQLGIKRKDRKAWVNCFSYVSPKGQSFATCQEVSAYLMSLLGYPEFKTDNIEYG
OLONG_006294-R3
C2H2 ZF
229
252
YECQQCNSTFHGQSAYAHHLITFH
OLONG_006294-R3
C2H2 ZF
278
300
FECPVCNKTFEEQSRYFGHVGSH
OLONG_006294-R4
MBD
110
172
GDHLPSGWRLQLGIKRKDRKAWVNCFSYVSPKGQSFATCQEVSAYLMSLLGYPEFKTDNIEYG
OLONG_006294-R4
C2H2 ZF
229
252
YECQQCNSTFHGQSAYAHHLITFH
OLONG_006294-R4
C2H2 ZF
278
300
FECPVCNKTFEEQSRYFGHVGSH
OLONG_006294-R5
MBD
34
96
GDHLPSGWRLQLGIKRKDRKAWVNCFSYVSPKGQSFATCQEVSAYLMSLLGYPEFKTDNIEYG
OLONG_006294-R5
C2H2 ZF
153
176
YECQQCNSTFHGQSAYAHHLITFH
OLONG_006294-R5
C2H2 ZF
202
224
FECPVCNKTFEEQSRYFGHVGSH
Links
Other
C2H2 ZF,MBD
family TFs
Other
Oryza longistaminata
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA028878
Oryza indica
BGIOSGA028878
N
0.991
ONIVA08G20630
Oryza nivara
ONIVA08G20630
N
0.991
OS08G0485700
Oryza sativa
OS08G0485700
N
0.991
OBART08G18610
Oryza barthii
OBART08G18610
N
0.972
OS08G0485600
Oryza sativa
OS08G0485600
N
0.972
BGIOSGA028876
Oryza indica
BGIOSGA028876
N
0.972
OGLUM08G19590
Oryza glumaepatula
OGLUM08G19590
N
0.972
OGLUM08G19580
Oryza glumaepatula
OGLUM08G19580
N
0.955
OPUNC08G16580
Oryza punctata
OPUNC08G16580
N
0.936
OB08G25720
Oryza brachyantha
OB08G25720
N
0.737