Zscan20 (Rattus norvegicus)
C2H2 ZF,Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2)
PF00249 (Myb_DNA-binding) 		IPR007087
IPR014778 		ENSRNOG00000005886 T076693_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZSCAN20 (zinc finger and SCAN domain containing 20). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zscan20
M00764_2.00 		Mus musculus
NNNNNNNN
NNNNNNNN		 PBM
Weirauch et al.(2013)
pTH3997 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000008887 Myb 316 376
ENSRNOP00000008887 Myb 477 537
ENSRNOP00000008887 C2H2 ZF 725 747
ENSRNOP00000008887 C2H2 ZF 753 775
ENSRNOP00000008887 C2H2 ZF 861 883
ENSRNOP00000008887 C2H2 ZF 889 911
ENSRNOP00000008887 C2H2 ZF 917 939
ENSRNOP00000008887 C2H2 ZF 945 967
ENSRNOP00000008887 C2H2 ZF 973 995
ENSRNOP00000008887 C2H2 ZF 1001 1023

Links

Other C2H2 ZF,Myb/SANT family TFs
Other Rattus norvegicus TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZSCAN20 Ochotona princeps ENSOPRG00000006227 N 0.832
Zscan20 Mus musculus ENSMUSG00000061894 D 0.714