CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_151000079
(
Branchiostoma floridae
)
C2H2 ZF,Pipsqueak
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
PF05225 (HTH_psq)
IPR007087
IPR007889
fgenesh2_pg.scaffold_151000079
T076756_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_151000079
Pipsqueak
1
39
MEAALEAANNGASVYSLAKKFGIPRTTLIGRIKGHHGEV
fgenesh2_pg.scaffold_151000079
C2H2 ZF
432
454
YKCDKCDYSTSRKEYLKRHMFRH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
462
484
YKCDQCDYSSAQKHYLKAHMVKH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
518
540
FVCEVCEFSSASKHRLQLHKQTH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
546
568
YKCDQCDYTASRKVYLARHKTKH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
573
595
LACSLCEYSTADSGRLSNHMAVH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
601
623
YKCDKCDYSAVRKDHLKQHMFKH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
631
653
YKCDQCDFSAAQKVNLKAHMAKH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
658
680
YKCDQCDYYTGRRDSLTTHMAKH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
686
708
YMCGECGYRTTEKFCLTQHMKTH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
713
735
YKCDQCDYYSARKNDLDIHRRKH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
741
763
YTCKECGYTTVSQAYLTRHMRVH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
769
791
YRCDQCDFSTAWKGCLTRHIEEH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
797
818
YLCGECGFRTTKSNLHRHMKIH
fgenesh2_pg.scaffold_151000079
C2H2 ZF
824
846
YRCDLCEYCTNRKESLARHMATH
Links
Other
C2H2 ZF,Pipsqueak
family TFs
Other
Branchiostoma floridae
TFs
0 Related TFs
">No related TF found