CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CpipJ_CPIJ006366
(
Culex pipiens
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
CpipJ_CPIJ006366
T077559_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gl
M03671_2.00
Drosophila melanogaster
RTTACCATACAAGTGCAV
BTGCACTTGTATGGTAAY
SELEX
Nitta et al.(2015)
gl_1
0.813
0.939
gl
M06078_2.00
Drosophila melanogaster
DAYNCWTBAAAT
ATTTVAWGNRTH
B1H
Zhu et al.(2011)
gl_FlyReg_FBgn0004618
0.813
0.939
gl
M06079_2.00
Drosophila melanogaster
TTRTABGGYTTC
GAARCCVTAYAA
B1H
Zhu et al.(2011)
gl_SANGER_5_FBgn0004618
0.813
0.939
gl
M06080_2.00
Drosophila melanogaster
NNBDWNTADGGCTTC
GAAGCCHTANWHVNN
B1H
Zhu et al.(2011)
gl_SOLEXA_5_FBgn0004618
0.813
0.939
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CpipJ_CPIJ006366-RA
C2H2 ZF
432
453
LCRLCGKTYARPSTLKTHLRTH
CpipJ_CPIJ006366-RA
C2H2 ZF
459
481
YRCSDCSKSFSQAANLAAHIRTH
CpipJ_CPIJ006366-RA
C2H2 ZF
487
509
FRCPICDRRFSQSSSVTTHMRTH
CpipJ_CPIJ006366-RA
C2H2 ZF
515
537
YRCRACKKAFSDSSTLTKHLRIH
CpipJ_CPIJ006366-RA
C2H2 ZF
543
565
YQCKLCLLRFSQSGNLNRHMRVH
Links
Other
C2H2 ZF
family TFs
Other
Culex pipiens
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy