CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CpipJ_CPIJ010649
(
Culex pipiens
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
CpipJ_CPIJ010649
T077683_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
odd
M03667_2.00
Drosophila melanogaster
WGCTACCGGTAGCH
DGCTACCGGTAGCW
SELEX
Nitta et al.(2015)
odd_1
0.785
0.913
odd
M06467_2.00
Drosophila melanogaster
BTGCTACTGKD
HMCAGTAGCAV
B1H
Mathelier et al.(2014)
MA0454.1
0.785
0.913
odd
M06058_2.00
Drosophila melanogaster
BTGCTACTGKD
HMCAGTAGCAV
B1H
Zhu et al.(2011)
odd_NAR_FBgn0002985
0.785
0.913
odd
M06059_2.00
Drosophila melanogaster
GCTWCYGDW
WHCRGWAGC
B1H
Zhu et al.(2011)
odd_NBT_1.5_FBgn0002985
0.785
0.913
odd
M06060_2.00
Drosophila melanogaster
GCTACYGKD
HMCRGTAGC
B1H
Zhu et al.(2011)
odd_NBT_2.5_FBgn0002985
0.785
0.913
odd
M06061_2.00
Drosophila melanogaster
GCTACTGKD
HMCAGTAGC
B1H
Zhu et al.(2011)
odd_NBT_5_FBgn0002985
0.785
0.913
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CpipJ_CPIJ010649-RA
C2H2 ZF
239
261
FICKYCNRHFTKSYNLLIHERTH
CpipJ_CPIJ010649-RA
C2H2 ZF
267
289
YSCDICGKSFRRQDHLRDHRYIH
CpipJ_CPIJ010649-RA
C2H2 ZF
295
317
FKCSDCGKGFCQSRTLAVHKITH
CpipJ_CPIJ010649-RA
C2H2 ZF
323
345
HKCNICNRTFNQRANLKTHMQSH
Links
Other
C2H2 ZF
family TFs
Other
Culex pipiens
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy