CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RO3G_05225
(
Rhizopus oryzae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
RO3G_05225
T078169_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RO3G_07016
M01436_2.00
Rhizopus oryzae
NNCYCCYNN
NNRGGRGNN
PBM
Najafabadi et al.(2015a)
pTH10224
0.797
0.891
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
RO3T_05224
C2H2 ZF
143
168
FACEFQDCGKVFGRQEHVKRHVRSIH
RO3T_05224
C2H2 ZF
174
198
YVCPYDSCQKRFARSDNLNQHIRTH
Links
Other
C2H2 ZF
family TFs
Other
Rhizopus oryzae
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy