CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RO3G_13382
(
Rhizopus oryzae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
RO3G_13382
T078214_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RO3G_13382
M01440_2.00
Rhizopus oryzae
KRCGCCAC
GTGGCGYM
PBM
Najafabadi et al.(2015a)
pTH10229
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01440_2.00
C2H2 ZF
51
73
YDCNICPRSFARKHDLQRHIRVH
M01440_2.00
C2H2 ZF
79
100
YYCLNCEKSFARTDALKRHLRM
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
RO3T_13381
C2H2 ZF
184
206
YDCNICPRSFARKHDLQRHIRVH
RO3T_13381
C2H2 ZF
212
233
YYCLNCEKSFARTDALKRHLRM
Links
Other
C2H2 ZF
family TFs
Other
Rhizopus oryzae
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy