AMTR_s00137p00104280 (Amborella trichopoda)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AMTR_s00137p00104280 T080696_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.790 0.870
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.790 0.804
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.787 0.848
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT

AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.787 0.848
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN

NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.787 0.848
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN

NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.782 0.826
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH

DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.782 0.826
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.770 0.717
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.770 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERM93944 C2H2 ZF 82 104
ERM93944 C2H2 ZF 130 152

Links

Other C2H2 ZF family TFs
Other Amborella trichopoda TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.814
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.814
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.814
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.803
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.802
AZF3 Arabidopsis thaliana AT5G43170 I 0.802
Bra033666 Brassica rapa Bra033666 I 0.795
Bo7g065200 Brassica oleracea Bo7g065200 I 0.795
Bo3g037560 Brassica oleracea Bo3g037560 I 0.794
Bra040325 Brassica rapa Bra040325 I 0.794
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.794
Bra000372 Brassica rapa Bra000372 I 0.794
Bo4g195370 Brassica oleracea Bo4g195370 I 0.794
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.792
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.792
30170.m013751 Ricinus communis 30170.m013751 I 0.792
Bo7g048650 Brassica oleracea Bo7g048650 I 0.792
TCM_000780 Theobroma cacao TCM_000780 I 0.792
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.790
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.790
ZAT6 Arabidopsis thaliana AT5G04340 D 0.790
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.790
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.790
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.790
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.790
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.790
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.790
Pm021284 Prunus mume Pm021284 I 0.790
Pm005390 Prunus mume Pm005390 I 0.790
Bo1g113530 Brassica oleracea Bo1g113530 I 0.790
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.790
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.790
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.790
TCM_007214 Theobroma cacao TCM_007214 I 0.790
TCM_034720 Theobroma cacao TCM_034720 I 0.790
Ca_18364 Cicer arietinum Ca_18364 I 0.790
Bo5g113850 Brassica oleracea Bo5g113850 I 0.790
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.790
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.790
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.790
AZF2 Arabidopsis thaliana AT3G19580 D 0.790
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.790
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.790
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.790
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.790
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.790
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.790
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.790
PK10188.1 Cannabis sativa PK10188.1 I 0.790
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.790
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.790
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.790
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.790
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.790
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.790
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.790
MDP0000198015 Malus domestica MDP0000198015 I 0.790
MDP0000762756 Malus domestica MDP0000762756 I 0.790
MDP0000573176 Malus domestica MDP0000573176 I 0.790
MDP0000319225 Malus domestica MDP0000319225 I 0.790
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.790
Ca_01586 Cicer arietinum Ca_01586 I 0.790
Bra022436 Brassica rapa Bra022436 I 0.790
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.790
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.790
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.790
Bra038219 Brassica rapa Bra038219 I 0.790
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.790
Bra009464 Brassica rapa Bra009464 I 0.790
Bo9g181170 Brassica oleracea Bo9g181170 I 0.790
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.790
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.790
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.790
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.789
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.789
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.789
ZAT10 Arabidopsis thaliana AT1G27730 D 0.787
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.787
Bra010922 Brassica rapa Bra010922 I 0.787
Bo3g142840 Brassica oleracea Bo3g142840 I 0.787
Bo1g081350 Brassica oleracea Bo1g081350 I 0.782
Bra029985 Brassica rapa Bra029985 I 0.782
Bo2g168030 Brassica oleracea Bo2g168030 I 0.782
AZF1 Arabidopsis thaliana AT5G67450 D 0.782
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.782
Bra037845 Brassica rapa Bra037845 I 0.782
Bra031834 Brassica rapa Bra031834 I 0.782
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.782
Bo9g019120 Brassica oleracea Bo9g019120 I 0.782
Bra012914 Brassica rapa Bra012914 I 0.782
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.781
28152.m000908 Ricinus communis 28152.m000908 I 0.781
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.781
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.781
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.781
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.781
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.781
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.781
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.780
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.780
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.780
MLOC_70662 Hordeum vulgare MLOC_70662 I 0.780
Bra018817 Brassica rapa Bra018817 I 0.780
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.777
mgf006006m Mimulus guttatus mgf006006m I 0.777
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.777
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.776
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.776
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.776
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.776
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.776
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.776
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.776
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.776
Ca_23672 Cicer arietinum Ca_23672 I 0.776
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.776
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.776
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.776
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.776
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.776
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.776
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.775
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.774
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.772
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.772
OB03G42170 Oryza brachyantha OB03G42170 I 0.771
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.770
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.770
ZAT4 Arabidopsis thaliana AT2G45120 D 0.770
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.770
ZAT9 Arabidopsis thaliana AT3G60580 D 0.770
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.770
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.770
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.770
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.770
AC211702.2_FG002 Zea mays AC211702.2_FG002 I 0.770
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.770
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.770
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.770
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.770
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.769
Bo5g052290 Brassica oleracea Bo5g052290 I 0.768
Bra032845 Brassica rapa Bra032845 I 0.768
Si023013m.g Setaria italica Si023013m.g I 0.767
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.767
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.767
OS12G0583700 Oryza sativa OS12G0583700 I 0.767
Ca_05641 Cicer arietinum Ca_05641 I 0.766
Cla001400 Citrullus lanatus Cla001400 I 0.766
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.766
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.766
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.766
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.766
Cla022966 Citrullus lanatus Cla022966 I 0.766
Bra029315 Brassica rapa Bra029315 N 0.763
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.763
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.763
Bo2g161550 Brassica oleracea Bo2g161550 N 0.763
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.763
GLYMA11G15140 Glycine max GLYMA11G15140 I 0.762
30147.m014242 Ricinus communis 30147.m014242 I 0.761
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.761
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.761
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.760
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.760
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.760
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.760
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.760
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.758
Pavir.J15304 Panicum virgatum Pavir.J15304 N 0.758
Pavir.J16973 Panicum virgatum Pavir.J16973 N 0.758
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.758
Traes_2BS_DD07C2EE6 Triticum aestivum Traes_2BS_DD07C2EE6 N 0.758
Sb02g038000 Sorghum bicolor Sb02g038000 N 0.758
29661.m000908 Ricinus communis 29661.m000908 I 0.757
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.757