SGR5 (Arabidopsis thaliana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AT2G01940 T080838_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SGR5
M06805_2.00
Arabidopsis thaliana
WTTTTGTCTTWTHYD

HRDAWAAGACAAAAW
Dap-seq
OMalley et al.(2016)
SGR5_col_a
(Direct) (Direct)
SGR5
M06806_2.00
Arabidopsis thaliana
WTTTGTCTYWWHBNN

NNVDWWRAGACAAAW
Dap-seq
OMalley et al.(2016)
SGR5_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G01940.1 C2H2 ZF 151 172
AT2G01940.1 C2H2 ZF 171 198

Links

Other C2H2 ZF family TFs
Other Arabidopsis thaliana TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I 0.000
VIT_08s0040g01240 Vitis vinifera VIT_08s0040g01240 I 0.000
Aquca_004_00748 Aquilegia coerulea Aquca_004_00748 I 0.000
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I 0.000
evm.TU.supercontig_92.83 Carica papaya evm.TU.supercontig_92.83 N 0.000
Ciclev10012626m.g Citrus clementina Ciclev10012626m.g N 0.000
Carubv10023903m.g Capsella rubella Carubv10023903m.g N 0.000
Carubv10017947m.g Capsella rubella Carubv10017947m.g N 0.000
Cagra.1642s0077 Capsella grandiflora Cagra.1642s0077 N 0.000
Cagra.0578s0007 Capsella grandiflora Cagra.0578s0007 N 0.000
Bostr.9345s0019 Boechera stricta Bostr.9345s0019 N 0.000
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N 0.000
Cucsa.340200 Cucumis sativus Cucsa.340200 N 0.000
cassava7163.valid.m1 Manihot esculenta cassava7163.valid.m1 N 0.000
gene14814-v1.0-hybrid Fragaria vesca gene14814-v1.0-hybrid N 0.000
Gorai.007G352300 Gossypium raimondii Gorai.007G352300 N 0.000
chr1.CM0816.330.nc Lotus japonicus chr1.CM0816.330.nc N 0.000
PK23387.1 Cannabis sativa PK23387.1 N 0.000
Thhalv10017546m.g Eutrema salsugineum Thhalv10017546m.g N 0.000
Thhalv10006410m.g Eutrema salsugineum Thhalv10006410m.g N 0.000
SapurV1A.0189s0140 Salix purpurea SapurV1A.0189s0140 N 0.000
SapurV1A.0159s0020 Salix purpurea SapurV1A.0159s0020 N 0.000
Pavir.J24868 Panicum virgatum Pavir.J24868 N 0.000
Pavir.J02699 Panicum virgatum Pavir.J02699 N 0.000
orange1.1g026479m.g Citrus sinensis orange1.1g026479m.g N 0.000
MDP0000213892 Malus domestica MDP0000213892 N 0.000
MDP0000138102 Malus domestica MDP0000138102 N 0.000
Lus10042017.g Linum usitatissimum Lus10042017.g N 0.000
Lus10018020.g Linum usitatissimum Lus10018020.g N 0.000
30180.m001071 Ricinus communis 30180.m001071 N 0.000
Pm025589 Prunus mume Pm025589 N 0.000
Cla017413 Citrullus lanatus Cla017413 N 0.000
GRMZM2G027068 Zea mays GRMZM2G027068 N 0.000
GLYMA19G30910 Glycine max GLYMA19G30910 N 0.000
GLYMA03G28150 Glycine max GLYMA03G28150 N 0.000
GLYMA02G23590 Glycine max GLYMA02G23590 N 0.000
BRADI1G04280 Brachypodium distachyon BRADI1G04280 N 0.000
Bra016951 Brassica rapa Bra016951 N 0.000
Bra014672 Brassica rapa Bra014672 N 0.000
Bra004599 Brassica rapa Bra004599 N 0.000
Bo4g190700 Brassica oleracea Bo4g190700 N 0.000
Bo4g112750 Brassica oleracea Bo4g112750 N 0.000
Bo4g012960 Brassica oleracea Bo4g012960 N 0.000
Bo3g035410 Brassica oleracea Bo3g035410 N 0.000
GSMUA_Achr2G20040_001 Musa acuminata GSMUA_Achr2G20040_001 N 0.000
GSMUA_Achr3G03510_001 Musa acuminata GSMUA_Achr3G03510_001 N 0.000
Ca_07159 Cicer arietinum Ca_07159 N 0.000
Traes_5BL_CBFAD4B59 Triticum aestivum Traes_5BL_CBFAD4B59 N 0.000
TCM_024016 Theobroma cacao TCM_024016 N 0.000
Solyc10g078380.1 Solanum lycopersicum Solyc10g078380.1 N 0.000
Sb01g003830 Sorghum bicolor Sb01g003830 N 0.000
PRUPE_ppa011532mg Prunus persica PRUPE_ppa011532mg N 0.000
POPTR_0016s03460 Populus trichocarpa POPTR_0016s03460 N 0.000
POPTR_0006s03550 Populus trichocarpa POPTR_0006s03550 N 0.000
PGSC0003DMG400008378 Solanum tuberosum PGSC0003DMG400008378 N 0.000
OS03G0811400 Oryza sativa OS03G0811400 N 0.000
ORGLA03G0352000 Oryza glaberrima ORGLA03G0352000 N 0.000
GSMUA_Achr8G23980_001 Musa acuminata GSMUA_Achr8G23980_001 N 0.000
BHLH106 Arabidopsis thaliana AT2G41130 N 0.000