AT2G18490 (Arabidopsis thaliana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AT2G18490 T080843_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. Gene is expressed in rosettes, stems, floral buds, and flowers by RT-PCR.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G22990
M06821_2.00
Arabidopsis thaliana
WCGWHDTCGWYNHNN

NNDNRWCGAHDWCGW
Dap-seq
OMalley et al.(2016)
AT5G22990_col_a
0.827 0.913
AT2G15740
M06810_2.00
Arabidopsis thaliana
WCGHHDYCGWY

RWCGRHDDCGW
Dap-seq
OMalley et al.(2016)
AT2G15740_col_a
0.825 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G18490.1 C2H2 ZF 169 191
AT2G18490.2 C2H2 ZF 219 241

Links

Other C2H2 ZF family TFs
Other Arabidopsis thaliana TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.10199s0147 Boechera stricta Bostr.10199s0147 I 0.827
AT5G22990 Arabidopsis thaliana AT5G22990 D 0.827
Bo7g010020 Brassica oleracea Bo7g010020 I 0.827
AT2G15740 Arabidopsis thaliana AT2G15740 D 0.825
Cagra.3954s0034 Capsella grandiflora Cagra.3954s0034 I 0.825
Cagra.6034s0007 Capsella grandiflora Cagra.6034s0007 I 0.825
Thhalv10015522m.g Eutrema salsugineum Thhalv10015522m.g I 0.825
Carubv10002800m.g Capsella rubella Carubv10002800m.g I 0.825
Carubv10015875m.g Capsella rubella Carubv10015875m.g I 0.825
scaffold_602360.1 Arabidopsis lyrata scaffold_602360.1 I 0.825
Bo9g147060 Brassica oleracea Bo9g147060 I 0.825
Thhalv10023174m.g Eutrema salsugineum Thhalv10023174m.g I 0.825
Carubv10016477m.g Capsella rubella Carubv10016477m.g I 0.825
Bra039606 Brassica rapa Bra039606 I 0.825
scaffold_303767.1 Arabidopsis lyrata scaffold_303767.1 I 0.825
Carubv10027554m.g Capsella rubella Carubv10027554m.g I 0.805
Carubv10025077m.g Capsella rubella Carubv10025077m.g I 0.805
Cagra.0604s0001 Capsella grandiflora Cagra.0604s0001 I 0.805
Bostr.18351s0050 Boechera stricta Bostr.18351s0050 I 0.805
Cagra.2968s0004 Capsella grandiflora Cagra.2968s0004 I 0.805
AT5G42640 Arabidopsis thaliana AT5G42640 I 0.793
Carubv10015674m.g Capsella rubella Carubv10015674m.g I 0.766