AT2G18490 (Arabidopsis thaliana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AT2G18490 T080843_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. Gene is expressed in rosettes, stems, floral buds, and flowers by RT-PCR.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G22990
M06821_2.00
Arabidopsis thaliana
WCGWHDTCGWYNHNN

NNDNRWCGAHDWCGW
Dap-seq
OMalley et al.(2016)
AT5G22990_col_a
0.827 0.913
AT2G15740
M06810_2.00
Arabidopsis thaliana
WCGHHDYCGWY

RWCGRHDDCGW
Dap-seq
OMalley et al.(2016)
AT2G15740_col_a
0.825 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G18490.1 C2H2 ZF 169 191
AT2G18490.2 C2H2 ZF 219 241

Links

Other C2H2 ZF family TFs
Other Arabidopsis thaliana TFs

Invalid Input OrderBy

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action