TF Information

IDD9 *(Arabidopsis thaliana)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	AT3G45260	T080854_2.00	Ensembl (2018-Dec-8)	Link out
NCBI Gene Info: Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
IDD9 M01060_2.00	Arabidopsis thaliana	NNNHRDHNNN	NNNDHYDNNN	PBM Sullivan et al.(2014) pTH7162	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
IDD1 M06824_2.00	Arabidopsis thaliana	DNTTTTGTCKTTTWBYD	HRVWAAAMGACAAAANH	Dap-seq OMalley et al.(2016) At5g66730_colamp_a	0.763	0.930
IDD1 M06825_2.00	Arabidopsis thaliana	WDTTTTGTCKTTTWNYD	HRNWAAAMGACAAAAHW	Dap-seq OMalley et al.(2016) At5g66730_col	0.763	0.930
IDD2 M01061_2.00	Arabidopsis thaliana	NHTTGTHNNN	NNNDACAADN	PBM Sullivan et al.(2014) pTH7537	0.768	0.924
JKD M06818_2.00	Arabidopsis thaliana	HHNWWTTTTGTCKTTTWBYD	HRVWAAAMGACAAAAWWNDD	Dap-seq OMalley et al.(2016) JKD_col_a	0.759	0.884
IDD2 M06815_2.00	Arabidopsis thaliana	TTTTGTCKTTTWVYD	HRBWAAAMGACAAAA	Dap-seq OMalley et al.(2016) IDD2_col_a	0.768	0.924
IDD2 M06816_2.00	Arabidopsis thaliana	NNNTTTTGTCKTHTWNBD	HVNWADAMGACAAAANNN	Dap-seq OMalley et al.(2016) IDD2_colamp_a	0.768	0.924
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M01060_2.00	C2H2 ZF	51	73	FICEVCNKGFKRDQNLQLHRRGH
M01060_2.00	C2H2 ZF	128	149	WKCDKCSKKYAVMSDWKAHSKI
M01060_2.00	C2H2 ZF	148	174	KICGTKEYRCDCGTLFSRKDSFITHRA

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AT3G45260.1	C2H2 ZF	145	166	WKCDKCSKKYAVMSDWKAHSKI
AT3G45260.1	C2H2 ZF	165	191	KICGTKEYRCDCGTLFSRKDSFITHRA
AT3G45260.2	C2H2 ZF	68	90	FICEVCNKGFKRDQNLQLHRRGH
AT3G45260.2	C2H2 ZF	145	166	WKCDKCSKKYAVMSDWKAHSKI
AT3G45260.2	C2H2 ZF	165	191	KICGTKEYRCDCGTLFSRKDSFITHRA

Links
Other C2H2 ZF family TFs
Other *Arabidopsis thaliana* TFs

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282 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action