YY1 (Arabidopsis thaliana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AT4G06634 T080866_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a C2H2-type zinc finger transcription factor with both tran- scriptional repression and activation domains, that binds a G-rich, 11-bp DNA-binding motif.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
YY1
M01443_2.00
Arabidopsis thaliana
NNNVCWYNN

NNRWGBNNN
PBM
Najafabadi et al.(2015a)
pTH11160
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01443_2.00 C2H2 ZF 41 65
M01443_2.00 C2H2 ZF 70 94
M01443_2.00 C2H2 ZF 100 124
M01443_2.00 C2H2 ZF 130 155
M01443_2.00 C2H2 ZF 192 217

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G06634.1 C2H2 ZF 79 103
AT4G06634.1 C2H2 ZF 108 132
AT4G06634.1 C2H2 ZF 138 162
AT4G06634.1 C2H2 ZF 168 193
AT4G06634.1 C2H2 ZF 230 255
AT4G06634.2 C2H2 ZF 41 65
AT4G06634.2 C2H2 ZF 70 94
AT4G06634.2 C2H2 ZF 100 124
AT4G06634.2 C2H2 ZF 130 155
AT4G06634.2 C2H2 ZF 192 217
AT4G06634.3 C2H2 ZF 68 92
AT4G06634.3 C2H2 ZF 97 121
AT4G06634.3 C2H2 ZF 127 155
AT4G06634.3 C2H2 ZF 161 186
AT4G06634.3 C2H2 ZF 223 248

Links

Other C2H2 ZF family TFs
Other Arabidopsis thaliana TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh2_kg.6__2821__AT4G06634.1 Arabidopsis lyrata fgenesh2_kg.6__2821__AT4G06634.1 I 0.818
Bostr.3877s0062 Boechera stricta Bostr.3877s0062 I 0.818
Bra035726 Brassica rapa Bra035726 I 0.818
Bo00829s040 Brassica oleracea Bo00829s040 I 0.818
Bo3g023850 Brassica oleracea Bo3g023850 I 0.817
Bra029186 Brassica rapa Bra029186 I 0.817
Thhalv10028723m.g Eutrema salsugineum Thhalv10028723m.g I 0.816
Cagra.2657s0002 Capsella grandiflora Cagra.2657s0002 I 0.804
Carubv10001157m.g Capsella rubella Carubv10001157m.g I 0.804