AT4G17810 (Arabidopsis thaliana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AT4G17810 T080868_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RBE
M01858_2.00
Arabidopsis thaliana
NNNASWN

NWSTNNN
PBM
Weirauch et al.(2014)
pTH7538
0.769 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G17810.2 C2H2 ZF 46 68

Links

Other C2H2 ZF family TFs
Other Arabidopsis thaliana TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cla021878 Citrullus lanatus Cla021878 I 0.827
Cucsa.255130 Cucumis sativus Cucsa.255130 I 0.827
Bra013257 Brassica rapa Bra013257 I 0.827
Bo1g017920 Brassica oleracea Bo1g017920 I 0.827
Carubv10006881m.g Capsella rubella Carubv10006881m.g I 0.827
Bostr.30275s0246 Boechera stricta Bostr.30275s0246 I 0.827
Cagra.3356s0074 Capsella grandiflora Cagra.3356s0074 I 0.827
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I 0.817
cassava40050.m1 Manihot esculenta cassava40050.m1 I 0.817
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I 0.817
cassava3359.m1 Manihot esculenta cassava3359.m1 I 0.817
TRIUR3_03721 Triticum urartu TRIUR3_03721 I 0.817
Pm009420 Prunus mume Pm009420 I 0.817
29603.m000536 Ricinus communis 29603.m000536 I 0.817
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I 0.817
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I 0.817
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I 0.817
OS11G0707300 Oryza sativa OS11G0707300 I 0.817
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I 0.817
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I 0.817
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I 0.817
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I 0.817
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I 0.817
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I 0.817
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I 0.817
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I 0.817
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I 0.817
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I 0.817
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I 0.817
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I 0.817
MDP0000225209 Malus domestica MDP0000225209 I 0.817
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I 0.817
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I 0.817
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I 0.817
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I 0.817
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I 0.817
Lus10022206.g Linum usitatissimum Lus10022206.g I 0.817
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I 0.817
Carubv10016073m.g Capsella rubella Carubv10016073m.g I 0.817
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I 0.817
ONIVA11G23290 Oryza nivara ONIVA11G23290 I 0.817
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I 0.817
Carubv10024766m.g Capsella rubella Carubv10024766m.g I 0.817
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I 0.817
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I 0.817
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I 0.817
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I 0.817
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I 0.817
Si024070m.g Setaria italica Si024070m.g I 0.817
OBART11G23770 Oryza barthii OBART11G23770 I 0.817
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I 0.817
OLONG_005038 Oryza longistaminata OLONG_005038 I 0.817
Bra005874 Brassica rapa Bra005874 I 0.817
Bra023759 Brassica rapa Bra023759 I 0.817
GRMZM2G000126 Zea mays GRMZM2G000126 I 0.817
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I 0.817
Bo1g102390 Brassica oleracea Bo1g102390 I 0.817
Bo3g003640 Brassica oleracea Bo3g003640 I 0.817
BGIOSGA033510 Oryza indica BGIOSGA033510 I 0.817
ZFP11 Arabidopsis thaliana AT2G42410 I 0.817
OMERI07G13080 Oryza meridionalis OMERI07G13080 I 0.817
SUP Arabidopsis thaliana AT3G23130 I 0.817
GLYMA13G34450 Glycine max GLYMA13G34450 I 0.815
Ca_12901 Cicer arietinum Ca_12901 I 0.815
GLYMA12G35930 Glycine max GLYMA12G35930 I 0.815
F775_21953 Aegilops tauschii F775_21953 I 0.805
ONIVA04G01910 Oryza nivara ONIVA04G01910 I 0.805
OMERI04G02610 Oryza meridionalis OMERI04G02610 I 0.805
OB04G12040 Oryza brachyantha OB04G12040 I 0.805
LPERR04G01660 Leersia perrieri LPERR04G01660 I 0.805
Cucsa.313240 Cucumis sativus Cucsa.313240 I 0.805
GRMZM2G137736 Zea mays GRMZM2G137736 I 0.805
OLONG_022667 Oryza longistaminata OLONG_022667 I 0.805
OBART04G02370 Oryza barthii OBART04G02370 I 0.805
OGLUM04G02100 Oryza glumaepatula OGLUM04G02100 I 0.805
Pavir.Gb02516 Panicum virgatum Pavir.Gb02516 I 0.805
Pavir.J31403 Panicum virgatum Pavir.J31403 I 0.805
Sb06g001730 Sorghum bicolor Sb06g001730 I 0.805
Cla016442 Citrullus lanatus Cla016442 I 0.805
BGIOSGA015610 Oryza indica BGIOSGA015610 I 0.805
ORUFI04G03150 Oryza rufipogon ORUFI04G03150 I 0.805
Si011797m.g Setaria italica Si011797m.g I 0.805
OS04G0168100 Oryza sativa OS04G0168100 I 0.805
Pm002649 Prunus mume Pm002649 N 0.794
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I 0.794
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N 0.792
28345.m000111 Ricinus communis 28345.m000111 N 0.792
cassava4410.m1 Manihot esculenta cassava4410.m1 N 0.792
TCM_021876 Theobroma cacao TCM_021876 N 0.792
cassava22028.m1 Manihot esculenta cassava22028.m1 I 0.779
GLYMA11G34285 Glycine max GLYMA11G34285 I 0.779
Lus10024875.g Linum usitatissimum Lus10024875.g I 0.777
Lus10000705.g Linum usitatissimum Lus10000705.g I 0.777
e_gw1.186.49.1 Physcomitrella patens e_gw1.186.49.1 I 0.776
e_gw1.14.264.1 Physcomitrella patens e_gw1.14.264.1 I 0.776
Si019050m.g Setaria italica Si019050m.g I 0.769
OPUNC11G05640 Oryza punctata OPUNC11G05640 I 0.769
Bo9g176590 Brassica oleracea Bo9g176590 I 0.769
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I 0.769
OPUNC05G08760 Oryza punctata OPUNC05G08760 I 0.769
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I 0.769
OB05G18710 Oryza brachyantha OB05G18710 I 0.769
OBART05G10090 Oryza barthii OBART05G10090 I 0.769
Bra009160 Brassica rapa Bra009160 I 0.769
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I 0.769
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I 0.769
LjSGA_038753.2 Lotus japonicus LjSGA_038753.2 I 0.769
BGIOSGA018378 Oryza indica BGIOSGA018378 I 0.769
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I 0.769
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I 0.769
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I 0.769
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I 0.769
OS05G0286100 Oryza sativa OS05G0286100 I 0.769
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I 0.769
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I 0.769
OLONG_023754 Oryza longistaminata OLONG_023754 I 0.769
RBE Arabidopsis thaliana AT5G06070 D 0.769
TCM_021875 Theobroma cacao TCM_021875 I 0.769
TRIUR3_04794 Triticum urartu TRIUR3_04794 I 0.769
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I 0.769
ONIVA06G26970 Oryza nivara ONIVA06G26970 I 0.769
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I 0.769
Cucsa.321760 Cucumis sativus Cucsa.321760 I 0.769
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I 0.769
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I 0.769
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I 0.769
Carubv10002935m.g Capsella rubella Carubv10002935m.g I 0.769
MLOC_76482 Hordeum vulgare MLOC_76482 I 0.769
cassava14614.m1 Manihot esculenta cassava14614.m1 I 0.769
MTR_1g070265 Medicago truncatula MTR_1g070265 I 0.769
Cla008944 Citrullus lanatus Cla008944 I 0.769
OB02G10110 Oryza brachyantha OB02G10110 I 0.769
LPERR05G08090 Leersia perrieri LPERR05G08090 I 0.769
mg013419m Mimulus guttatus mg013419m I 0.767
e_gw1.1.457.1 Physcomitrella patens e_gw1.1.457.1 I 0.766
OB02G44430 Oryza brachyantha OB02G44430 I 0.766
Sb04g037590 Sorghum bicolor Sb04g037590 I 0.766
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I 0.766
BRADI3G55760 Brachypodium distachyon BRADI3G55760 I 0.766
F775_00917 Aegilops tauschii F775_00917 I 0.766
GRMZM2G344974 Zea mays GRMZM2G344974 I 0.766
Si019563m.g Setaria italica Si019563m.g I 0.766
e_gw1.6.268.1 Physcomitrella patens e_gw1.6.268.1 I 0.766
Cla008348 Citrullus lanatus Cla008348 N 0.757
MTR_4g064873 Medicago truncatula MTR_4g064873 N 0.757
cassava32634.m1 Manihot esculenta cassava32634.m1 N 0.757
GLYMA12G06340 Glycine max GLYMA12G06340 N 0.757
Cucsa.117650 Cucumis sativus Cucsa.117650 N 0.757