AT4G35610 (Arabidopsis thaliana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AT4G35610 T080870_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT4G35610
M00859_2.00
Arabidopsis thaliana
NNBHAGCTDNN

NNHAGCTDVNN
PBM
Franco-Zorrilla et al.(2014)
At4g35610
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00859_2.00 C2H2 ZF 139 160

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G35610.1 C2H2 ZF 139 160

Links

Other C2H2 ZF family TFs
Other Arabidopsis thaliana TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0005s10330 Populus trichocarpa POPTR_0005s10330 I 0.757
POPTR_0007s08920 Populus trichocarpa POPTR_0007s08920 I 0.757
scaffold_700556.1 Arabidopsis lyrata scaffold_700556.1 I 0.827
Cagra.2350s0104 Capsella grandiflora Cagra.2350s0104 I 0.827
Carubv10007498m.g Capsella rubella Carubv10007498m.g I 0.827
SapurV1A.0085s0140 Salix purpurea SapurV1A.0085s0140 I 0.757
Thhalv10026068m.g Eutrema salsugineum Thhalv10026068m.g I 0.769