CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT5G04390
(
Arabidopsis thaliana
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
AT5G04390
T080875_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
(Direct)
(Direct)
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.821
0.870
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.771
0.739
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.762
0.761
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN
NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.762
0.717
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN
NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.762
0.717
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01857_2.00
C2H2 ZF
51
73
YQCKTCDRTFPSFQALGGHRASH
M01857_2.00
C2H2 ZF
127
149
HECGICGAEFTSGQALGGHMRRH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G04390.1
C2H2 ZF
153
175
YQCKTCDRTFPSFQALGGHRASH
AT5G04390.1
C2H2 ZF
229
251
HECGICGAEFTSGQALGGHMRRH
Links
Other
C2H2 ZF
family TFs
Other
Arabidopsis thaliana
TFs
389 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy