BGIOSGA003122 (Oryza indica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 BGIOSGA003122 T081494_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IDD5
M06807_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTTSYD

HRSAAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
IDD5_colamp_a
0.827 1.000
IDD5
M06808_2.00
Arabidopsis thaliana
WTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAW
Dap-seq
OMalley et al.(2016)
IDD5_col
0.827 1.000
AT1G14580
M06797_2.00
Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWWNNN
Dap-seq
OMalley et al.(2016)
At1g14580_col_a
0.827 0.953
AT1G14580
M06798_2.00
Arabidopsis thaliana
NNTTTTGTCKTTTWSYD

HRSWAAAMGACAAAANN
Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a
0.827 0.953
IDD4
M06809_2.00
Arabidopsis thaliana
WWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWW
Dap-seq
OMalley et al.(2016)
IDD4_col_a
0.822 0.930
IDD7
M06803_2.00
Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHHN
Dap-seq
OMalley et al.(2016)
IDD7_col_a
0.822 0.930
MGP
M06795_2.00
Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAWHDND
Dap-seq
OMalley et al.(2016)
MGP_col_a
0.822 0.930
MGP
M06796_2.00
Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHNN
Dap-seq
OMalley et al.(2016)
MGP_colamp_a
0.822 0.930
NUC
M06822_2.00
Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD

HRVWARAMGACAAAANNNNN
Dap-seq
OMalley et al.(2016)
NUC_col_a
0.798 0.907
NUC
M06823_2.00
Arabidopsis thaliana
NDTTTTGTCGTYTWNYD

HRNWARACGACAAAAHN
Dap-seq
OMalley et al.(2016)
NUC_colamp_a
0.798 0.907
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.792 0.907
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD

HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.788 0.907
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.788 0.907
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA003122-PA C2H2 ZF 137 158
BGIOSGA003122-PA C2H2 ZF 157 183

Links

Other C2H2 ZF family TFs
Other Oryza indica TFs

667 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
augustus_masked-nMf.1.1.scaf06920-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf06920-processed-gene-0.0 N 0.000
augustus_masked-nMf.1.1.scaf10396-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf10396-processed-gene-0.0 N 0.000
maker-nMf.1.1.scaf00198-snap-gene-0.24 Meloidogyne floridensis maker-nMf.1.1.scaf00198-snap-gene-0.24 N 0.000
maker-nMf.1.1.scaf03265-augustus-gene-0.7 Meloidogyne floridensis maker-nMf.1.1.scaf03265-augustus-gene-0.7 N 0.000
maker-nMf.1.1.scaf04006-snap-gene-0.9 Meloidogyne floridensis maker-nMf.1.1.scaf04006-snap-gene-0.9 N 0.000
maker-nMf.1.1.scaf06148-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf06148-augustus-gene-0.3 N 0.000
maker-nMf.1.1.scaf06196-snap-gene-0.8 Meloidogyne floridensis maker-nMf.1.1.scaf06196-snap-gene-0.8 N 0.000
maker-nMf.1.1.scaf06884-augustus-gene-0.5 Meloidogyne floridensis maker-nMf.1.1.scaf06884-augustus-gene-0.5 N 0.000
maker-nMf.1.1.scaf08255-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf08255-snap-gene-0.4 N 0.000
maker-nMf.1.1.scaf11763-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf11763-augustus-gene-0.3 N 0.000
maker-nMf.1.1.scaf14574-augustus-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf14574-augustus-gene-0.4 N 0.000
maker-nMf.1.1.scaf15444-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf15444-snap-gene-0.4 N 0.000
MhA1_Contig1386.frz3.gene10 Meloidogyne hapla MhA1_Contig1386.frz3.gene10 N 0.000
MhA1_Contig2339.frz3.gene1 Meloidogyne hapla MhA1_Contig2339.frz3.gene1 N 0.000
MhA1_Contig2339.frz3.gene2 Meloidogyne hapla MhA1_Contig2339.frz3.gene2 N 0.000
MhA1_Contig41.frz3.gene12 Meloidogyne hapla MhA1_Contig41.frz3.gene12 N 0.000
MhA1_Contig790.frz3.gene2 Meloidogyne hapla MhA1_Contig790.frz3.gene2 N 0.000
MhA1_Contig790.frz3.gene5 Meloidogyne hapla MhA1_Contig790.frz3.gene5 N 0.000
MhA1_Contig988.frz3.gene1 Meloidogyne hapla MhA1_Contig988.frz3.gene1 N 0.000
Minc02054 Meloidogyne incognita Minc02054 N 0.000
Minc02055 Meloidogyne incognita Minc02055 N 0.000
Minc03976 Meloidogyne incognita Minc03976 N 0.000
Minc04725 Meloidogyne incognita Minc04725 N 0.000
Minc07962 Meloidogyne incognita Minc07962 N 0.000
Minc07964 Meloidogyne incognita Minc07964 N 0.000
Minc08183 Meloidogyne incognita Minc08183 N 0.000
Minc09140 Meloidogyne incognita Minc09140 N 0.000
Minc09142 Meloidogyne incognita Minc09142 N 0.000
Minc09143 Meloidogyne incognita Minc09143 N 0.000
Minc13321 Meloidogyne incognita Minc13321 N 0.000
Minc13448 Meloidogyne incognita Minc13448 N 0.000
Minc15187 Meloidogyne incognita Minc15187 N 0.000
Minc15189 Meloidogyne incognita Minc15189 N 0.000
Minc17464 Meloidogyne incognita Minc17464 N 0.000
Minc17667 Meloidogyne incognita Minc17667 N 0.000
Minc18661 Meloidogyne incognita Minc18661 N 0.000
Minc18991 Meloidogyne incognita Minc18991 N 0.000