Bo00829s040 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo00829s040 T081696_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.818 0.948
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo00829s040.1 C2H2 ZF 79 103
Bo00829s040.1 C2H2 ZF 108 132
Bo00829s040.1 C2H2 ZF 138 162
Bo00829s040.1 C2H2 ZF 168 193
Bo00829s040.1 C2H2 ZF 231 256

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.3877s0062 Boechera stricta Bostr.3877s0062 I 0.827
Bra035726 Brassica rapa Bra035726 I 0.827
fgenesh2_kg.6__2821__AT4G06634.1 Arabidopsis lyrata fgenesh2_kg.6__2821__AT4G06634.1 I 0.827
Bra029186 Brassica rapa Bra029186 I 0.826
Bo3g023850 Brassica oleracea Bo3g023850 I 0.826
Thhalv10028723m.g Eutrema salsugineum Thhalv10028723m.g I 0.825
YY1 Arabidopsis thaliana AT4G06634 D 0.818
Carubv10001157m.g Capsella rubella Carubv10001157m.g I 0.814
Cagra.2657s0002 Capsella grandiflora Cagra.2657s0002 I 0.814
Ca_00041 Cicer arietinum Ca_00041 N 0.759