Bo2g167740 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo2g167740 T081720_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD

HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.792 0.930
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.792 0.930
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.788 0.884
IDD5
M06807_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTTSYD

HRSAAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
IDD5_colamp_a
0.764 0.884
IDD5
M06808_2.00
Arabidopsis thaliana
WTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAW
Dap-seq
OMalley et al.(2016)
IDD5_col
0.764 0.884
AT1G14580
M06797_2.00
Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWWNNN
Dap-seq
OMalley et al.(2016)
At1g14580_col_a
0.764 0.837
AT1G14580
M06798_2.00
Arabidopsis thaliana
NNTTTTGTCKTTTWSYD

HRSWAAAMGACAAAANN
Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a
0.764 0.837
IDD7
M06803_2.00
Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHHN
Dap-seq
OMalley et al.(2016)
IDD7_col_a
0.759 0.860
IDD4
M06809_2.00
Arabidopsis thaliana
WWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWW
Dap-seq
OMalley et al.(2016)
IDD4_col_a
0.759 0.814
MGP
M06795_2.00
Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAWHDND
Dap-seq
OMalley et al.(2016)
MGP_col_a
0.759 0.814
MGP
M06796_2.00
Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHNN
Dap-seq
OMalley et al.(2016)
MGP_colamp_a
0.759 0.814
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g167740.1 C2H2 ZF 135 156
Bo2g167740.1 C2H2 ZF 155 181

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

611 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZHD7 Oryza sativa OS02G0706600 D 0.000
GLYMA20G35690 Glycine max GLYMA20G35690 I 0.000
29983.m003297 Ricinus communis 29983.m003297 I 0.000
cassava39895.m1 Manihot esculenta cassava39895.m1 I 0.000
mgf024641m Mimulus guttatus mgf024641m I 0.000
mgf026503m Mimulus guttatus mgf026503m I 0.000
Carubv10028391m.g Capsella rubella Carubv10028391m.g I 0.000
Ciclev10027184m.g Citrus clementina Ciclev10027184m.g I 0.000
Eucgr.I00022 Eucalyptus grandis Eucgr.I00022 I 0.000
gene14755-v1.0-hybrid Fragaria vesca gene14755-v1.0-hybrid I 0.000
Gorai.012G046200 Gossypium raimondii Gorai.012G046200 I 0.000
Lus10015900.g Linum usitatissimum Lus10015900.g I 0.000
MDP0000804580 Malus domestica MDP0000804580 I 0.000
Pavir.Aa00802 Panicum virgatum Pavir.Aa00802 I 0.000
Pavir.Ab02855 Panicum virgatum Pavir.Ab02855 I 0.000
Ca_12172 Cicer arietinum Ca_12172 I 0.000
Ca_02034 Cicer arietinum Ca_02034 I 0.000
GRMZM2G069365 Zea mays GRMZM2G069365 I 0.000
LPERR02G24020 Leersia perrieri LPERR02G24020 I 0.000
MLOC_18998 Hordeum vulgare MLOC_18998 I 0.000
OGLUM02G30190 Oryza glumaepatula OGLUM02G30190 I 0.000
OMERI02G28440 Oryza meridionalis OMERI02G28440 I 0.000
OPUNC02G27120 Oryza punctata OPUNC02G27120 I 0.000
POPTR_0004s14270 Populus trichocarpa POPTR_0004s14270 I 0.000
PRUPE_ppa020272mg Prunus persica PRUPE_ppa020272mg I 0.000
Sb04g030480 Sorghum bicolor Sb04g030480 I 0.000
SELMODRAFT_49899 Selaginella moellendorffii SELMODRAFT_49899 I 0.000
SELMODRAFT_59936 Selaginella moellendorffii SELMODRAFT_59936 I 0.000
Si020227m.g Setaria italica Si020227m.g I 0.000
TCM_001660 Theobroma cacao TCM_001660 I 0.000
SapurV1A.0185s0100 Salix purpurea SapurV1A.0185s0100 I 0.000