Bo8g076910 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo8g076910 T081777_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
REF6
M08081_2.00 		Arabidopsis thaliana
DNCTCTGTTTY
RAAACAGAGNH		 ChIP-seq
Mathelier et al.(2014)
MA1415.1 		0.800 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g076910.1 C2H2 ZF 1259 1282
Bo8g076910.1 C2H2 ZF 1283 1306
Bo8g076910.1 C2H2 ZF 1312 1336
Bo8g076910.1 C2H2 ZF 1342 1368

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra018060 Brassica rapa Bra018060 I 0.815
REF6 Arabidopsis lyrata fgenesh2_kg.5__1196__AT3G48430.1 I 0.805
scaffold_501791.1 Arabidopsis lyrata scaffold_501791.1 I 0.805
Cagra.0807s0010 Capsella grandiflora Cagra.0807s0010 I 0.804
Carubv10016578m.g Capsella rubella Carubv10016578m.g I 0.804
Thhalv10010068m.g Eutrema salsugineum Thhalv10010068m.g I 0.803
Thhalv10010066m.g Eutrema salsugineum Thhalv10010066m.g I 0.802
REF6 Arabidopsis thaliana AT3G48430 D 0.800