CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra003422
(
Brassica rapa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Bra003422
T081886_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH
DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.803
0.957
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.803
0.935
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN
NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.802
0.891
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN
NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.775
0.696
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra003422.1-P
C2H2 ZF
189
211
FTCETCGKVFKSYQALGGHRASH
Bra003422.1-P
C2H2 ZF
234
256
HECPICLRVFASGQALGGHKRSH
Links
Other
C2H2 ZF
family TFs
Other
Brassica rapa
TFs
192 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy