Bra013257 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra013257 T081911_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBE
M01858_2.00 		Arabidopsis thaliana
NNNASWN
NWSTNNN		 PBM
Weirauch et al.(2014)
pTH7538 		0.769 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra013257.1-P C2H2 ZF 46 68

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.3356s0074 Capsella grandiflora Cagra.3356s0074 I 0.827
Carubv10006881m.g Capsella rubella Carubv10006881m.g I 0.827
Bo1g017920 Brassica oleracea Bo1g017920 I 0.827
Cla021878 Citrullus lanatus Cla021878 I 0.827
Cucsa.255130 Cucumis sativus Cucsa.255130 I 0.827
Bostr.30275s0246 Boechera stricta Bostr.30275s0246 I 0.827
AT4G17810 Arabidopsis thaliana AT4G17810 I 0.827
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I 0.817
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I 0.817
29603.m000536 Ricinus communis 29603.m000536 I 0.817
cassava40050.m1 Manihot esculenta cassava40050.m1 I 0.817
cassava3359.m1 Manihot esculenta cassava3359.m1 I 0.817
TRIUR3_03721 Triticum urartu TRIUR3_03721 I 0.817
Pm009420 Prunus mume Pm009420 I 0.817
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I 0.817
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I 0.817
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I 0.817
OS11G0707300 Oryza sativa OS11G0707300 I 0.817
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I 0.817
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I 0.817
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I 0.817
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I 0.817
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I 0.817
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I 0.817
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I 0.817
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I 0.817
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I 0.817
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I 0.817
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I 0.817
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I 0.817
MDP0000225209 Malus domestica MDP0000225209 I 0.817
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I 0.817
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I 0.817
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I 0.817
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I 0.817
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I 0.817
Lus10022206.g Linum usitatissimum Lus10022206.g I 0.817
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I 0.817
Carubv10016073m.g Capsella rubella Carubv10016073m.g I 0.817
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I 0.817
ONIVA11G23290 Oryza nivara ONIVA11G23290 I 0.817
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I 0.817
Carubv10024766m.g Capsella rubella Carubv10024766m.g I 0.817
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I 0.817
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I 0.817
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I 0.817
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I 0.817
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I 0.817
Si024070m.g Setaria italica Si024070m.g I 0.817
OBART11G23770 Oryza barthii OBART11G23770 I 0.817
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I 0.817
OLONG_005038 Oryza longistaminata OLONG_005038 I 0.817
Bra005874 Brassica rapa Bra005874 I 0.817
Bra023759 Brassica rapa Bra023759 I 0.817
GRMZM2G000126 Zea mays GRMZM2G000126 I 0.817
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I 0.817
Bo1g102390 Brassica oleracea Bo1g102390 I 0.817
Bo3g003640 Brassica oleracea Bo3g003640 I 0.817
BGIOSGA033510 Oryza indica BGIOSGA033510 I 0.817
ZFP11 Arabidopsis thaliana AT2G42410 I 0.817
OMERI07G13080 Oryza meridionalis OMERI07G13080 I 0.817
SUP Arabidopsis thaliana AT3G23130 I 0.817
GLYMA13G34450 Glycine max GLYMA13G34450 I 0.815
Ca_12901 Cicer arietinum Ca_12901 I 0.815
GLYMA12G35930 Glycine max GLYMA12G35930 I 0.815
F775_21953 Aegilops tauschii F775_21953 I 0.805
ONIVA04G01910 Oryza nivara ONIVA04G01910 I 0.805
OMERI04G02610 Oryza meridionalis OMERI04G02610 I 0.805
OB04G12040 Oryza brachyantha OB04G12040 I 0.805
LPERR04G01660 Leersia perrieri LPERR04G01660 I 0.805
Cucsa.313240 Cucumis sativus Cucsa.313240 I 0.805
GRMZM2G137736 Zea mays GRMZM2G137736 I 0.805
OLONG_022667 Oryza longistaminata OLONG_022667 I 0.805
OBART04G02370 Oryza barthii OBART04G02370 I 0.805
OGLUM04G02100 Oryza glumaepatula OGLUM04G02100 I 0.805
Pavir.Gb02516 Panicum virgatum Pavir.Gb02516 I 0.805
Pavir.J31403 Panicum virgatum Pavir.J31403 I 0.805
Sb06g001730 Sorghum bicolor Sb06g001730 I 0.805
Cla016442 Citrullus lanatus Cla016442 I 0.805
BGIOSGA015610 Oryza indica BGIOSGA015610 I 0.805
ORUFI04G03150 Oryza rufipogon ORUFI04G03150 I 0.805
Si011797m.g Setaria italica Si011797m.g I 0.805
OS04G0168100 Oryza sativa OS04G0168100 I 0.805
Pm002649 Prunus mume Pm002649 N 0.794
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I 0.794
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N 0.792
28345.m000111 Ricinus communis 28345.m000111 N 0.792
cassava4410.m1 Manihot esculenta cassava4410.m1 N 0.792
TCM_021876 Theobroma cacao TCM_021876 N 0.792
cassava22028.m1 Manihot esculenta cassava22028.m1 I 0.779
GLYMA11G34285 Glycine max GLYMA11G34285 I 0.779
Lus10024875.g Linum usitatissimum Lus10024875.g I 0.777
Lus10000705.g Linum usitatissimum Lus10000705.g I 0.777
e_gw1.186.49.1 Physcomitrella patens e_gw1.186.49.1 I 0.776
e_gw1.14.264.1 Physcomitrella patens e_gw1.14.264.1 I 0.776
Si019050m.g Setaria italica Si019050m.g I 0.769
OPUNC11G05640 Oryza punctata OPUNC11G05640 I 0.769
Bo9g176590 Brassica oleracea Bo9g176590 I 0.769
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I 0.769
OPUNC05G08760 Oryza punctata OPUNC05G08760 I 0.769
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I 0.769
OB05G18710 Oryza brachyantha OB05G18710 I 0.769
OBART05G10090 Oryza barthii OBART05G10090 I 0.769
Bra009160 Brassica rapa Bra009160 I 0.769
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I 0.769
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I 0.769
LjSGA_038753.2 Lotus japonicus LjSGA_038753.2 I 0.769
BGIOSGA018378 Oryza indica BGIOSGA018378 I 0.769
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I 0.769
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I 0.769
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I 0.769
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I 0.769
OS05G0286100 Oryza sativa OS05G0286100 I 0.769
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I 0.769
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I 0.769
OLONG_023754 Oryza longistaminata OLONG_023754 I 0.769
RBE Arabidopsis thaliana AT5G06070 D 0.769
TCM_021875 Theobroma cacao TCM_021875 I 0.769
TRIUR3_04794 Triticum urartu TRIUR3_04794 I 0.769
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I 0.769
ONIVA06G26970 Oryza nivara ONIVA06G26970 I 0.769
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I 0.769
Cucsa.321760 Cucumis sativus Cucsa.321760 I 0.769
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I 0.769
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I 0.769
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I 0.769
Carubv10002935m.g Capsella rubella Carubv10002935m.g I 0.769
MLOC_76482 Hordeum vulgare MLOC_76482 I 0.769
cassava14614.m1 Manihot esculenta cassava14614.m1 I 0.769
MTR_1g070265 Medicago truncatula MTR_1g070265 I 0.769
Cla008944 Citrullus lanatus Cla008944 I 0.769
OB02G10110 Oryza brachyantha OB02G10110 I 0.769
LPERR05G08090 Leersia perrieri LPERR05G08090 I 0.769
mg013419m Mimulus guttatus mg013419m I 0.767
e_gw1.1.457.1 Physcomitrella patens e_gw1.1.457.1 I 0.766
OB02G44430 Oryza brachyantha OB02G44430 I 0.766
Sb04g037590 Sorghum bicolor Sb04g037590 I 0.766
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I 0.766
BRADI3G55760 Brachypodium distachyon BRADI3G55760 I 0.766
F775_00917 Aegilops tauschii F775_00917 I 0.766
GRMZM2G344974 Zea mays GRMZM2G344974 I 0.766
Si019563m.g Setaria italica Si019563m.g I 0.766
e_gw1.6.268.1 Physcomitrella patens e_gw1.6.268.1 I 0.766
Cla008348 Citrullus lanatus Cla008348 N 0.757
MTR_4g064873 Medicago truncatula MTR_4g064873 N 0.757
cassava32634.m1 Manihot esculenta cassava32634.m1 N 0.757
GLYMA12G06340 Glycine max GLYMA12G06340 N 0.757
Cucsa.117650 Cucumis sativus Cucsa.117650 N 0.757