CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra020571
(
Brassica rapa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Bra020571
T081933_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra020571.1-P
C2H2 ZF
32
54
YICHFCNKRFSTSQALGGHQNAH
Links
Other
C2H2 ZF
family TFs
Other
Brassica rapa
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh2_kg.6__2677__AT5G27880.1
Arabidopsis lyrata
fgenesh2_kg.6__2677__AT5G27880.1
N
0.779
Bo2g155500
Brassica oleracea
Bo2g155500
N
0.779
Bostr.29827s0107
Boechera stricta
Bostr.29827s0107
N
0.779
30076.m004693
Ricinus communis
30076.m004693
I
0.774
SapurV1A.0052s0050
Salix purpurea
SapurV1A.0052s0050
I
0.774
Ca_08116
Cicer arietinum
Ca_08116
I
0.767
MTR_2g067740
Medicago truncatula
MTR_2g067740
N
0.766
Ca_23376
Cicer arietinum
Ca_23376
N
0.766
Carubv10003820m.g
Capsella rubella
Carubv10003820m.g
I
0.765
Bra028724
Brassica rapa
Bra028724
I
0.765
GRMZM2G703281
Zea mays
GRMZM2G703281
I
0.765
Carubv10018785m.g
Capsella rubella
Carubv10018785m.g
I
0.765
evm.TU.supercontig_1307.1
Carica papaya
evm.TU.supercontig_1307.1
I
0.765
Bo2g007320
Brassica oleracea
Bo2g007320
I
0.765
Lus10017229.g
Linum usitatissimum
Lus10017229.g
I
0.765
GIS2
Arabidopsis lyrata
fgenesh2_kg.6__609__AT5G06650.1
I
0.765
Bostr.13129s0308
Boechera stricta
Bostr.13129s0308
I
0.765
GIS2
Arabidopsis thaliana
AT5G06650
I
0.765
Solyc10g078990.1
Solanum lycopersicum
Solyc10g078990.1
I
0.765
PGSC0003DMG400011450
Solanum tuberosum
PGSC0003DMG400011450
I
0.765
e_gw1.34.233.1
Physcomitrella patens
e_gw1.34.233.1
I
0.764
MDP0000121370
Malus domestica
MDP0000121370
I
0.762
MDP0000165710
Malus domestica
MDP0000165710
I
0.762
gene05169-v1.0-hybrid
Fragaria vesca
gene05169-v1.0-hybrid
I
0.762
GLYMA19G40220
Glycine max
GLYMA19G40220
I
0.762
Pm008291
Prunus mume
Pm008291
I
0.762
GLYMA03G37610
Glycine max
GLYMA03G37610
I
0.762
Pavir.Ha01090
Panicum virgatum
Pavir.Ha01090
I
0.757
evm.TU.supercontig_51.84
Carica papaya
evm.TU.supercontig_51.84
I
0.757
Si028367m.g
Setaria italica
Si028367m.g
I
0.757