CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra029985
(
Brassica rapa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Bra029985
T081953_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN
NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.798
0.913
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.798
0.913
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.792
0.826
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN
NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.788
0.848
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT
AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.788
0.848
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.788
0.848
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN
NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.787
0.826
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.766
0.717
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH
DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.766
0.717
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra029985.1-P
C2H2 ZF
85
107
YKCSVCGKSFPSYQALGGHKTSH
Bra029985.1-P
C2H2 ZF
147
169
HKCSICFKSFPSGQALGGHKRCH
Links
Other
C2H2 ZF
family TFs
Other
Brassica rapa
TFs
173 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy