Bra033666 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra033666 T081963_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.822 0.935
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.815 0.848
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT

AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.815 0.848
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN

NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.815 0.848
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.798 0.848
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN

NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.787 0.826
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH

DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.787 0.826
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.775 0.739
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.775 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra033666.1-P C2H2 ZF 69 91
Bra033666.1-P C2H2 ZF 111 133

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZBED1 Homo sapiens ENSG00000214717 D 0.000
ZBED1 Anolis carolinensis ENSACAG00000023513 I 0.000
ZBED1 Oryctolagus cuniculus ENSOCUG00000023740 I 0.000
ENSONIG00000007347 Oreochromis niloticus ENSONIG00000007347 I 0.000
ENSPANG00000011132 Papio anubis ENSPANG00000011132 I 0.000
ENSPPYG00000020088 Pongo abelii ENSPPYG00000020088 I 0.000
ENSSHAG00000012608 Sarcophilus harrisii ENSSHAG00000012608 I 0.000
Aan_R008132 Calypte anna Aan_R008132 I 0.000
Afo_R005396 Aptenodytes forsteri Afo_R005396 I 0.000
Brh_R008630 Buceros rhinoceros Brh_R008630 I 0.000
Cmyd_10021612 Chelonia mydas Cmyd_10021612 I 0.000
ENSP00000370620-D1 Bos grunniens ENSP00000370620-D1 I 0.000
ENSP00000370620 Macaca fascicularis ENSP00000370620 I 0.000
Gfo_R009655 Geospiza fortis Gfo_R009655 I 0.000
Pvit_08935 Pogona vitticeps Pvit_08935 I 0.000
Tal_R000939 Tyto alba Tal_R000939 I 0.000
XP_002933665 Xenopus tropicalis XP_002933665 I 0.000
ENSOARG00000008137 Ovis aries ENSOARG00000008137 I 0.000
ZBED1 Ornithorhynchus anatinus ENSOANG00000010515 I 0.000
ENSAMEG00000018666 Ailuropoda melanoleuca ENSAMEG00000018666 I 0.000
ENSAPLG00000011428 Anas platyrhynchos ENSAPLG00000011428 I 0.000
ZBED1 Bos taurus ENSBTAG00000024641 I 0.000
ENSCSAG00000019527 Chlorocebus sabaeus ENSCSAG00000019527 I 0.000
ZBED1 Dasypus novemcinctus ENSDNOG00000012869 I 0.000
ENSFALG00000015033 Ficedula albicollis ENSFALG00000015033 I 0.000
ZBED1 Felis catus ENSFCAG00000012522 I 0.000
ENSGALG00000028601 Gallus gallus ENSGALG00000028601 I 0.000
ZBED1 Gorilla gorilla ENSGGOG00000011706 I 0.000
ENSLACG00000011306 Latimeria chalumnae ENSLACG00000011306 I 0.000
ZBED1 Loxodonta africana ENSLAFG00000013332 I 0.000
ENSLOCG00000017415 Lepisosteus oculatus ENSLOCG00000017415 I 0.000
ZBED1 Meleagris gallopavo ENSMGAG00000015483 I 0.000
ZBED1 Macaca mulatta ENSMMUG00000007514 I 0.000
ENSNLEG00000018727 Nomascus leucogenys ENSNLEG00000018727 I 0.000
XP_002941050 Xenopus tropicalis XP_002941050 I 0.000