Bra037845 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra037845 T081971_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN

NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.827 0.978
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH

DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.827 0.978
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.787 0.826
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.787 0.783
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.783 0.826
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT

AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.783 0.826
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN

NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.783 0.826
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.766 0.717
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.766 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra037845.1-P C2H2 ZF 88 110
Bra037845.1-P C2H2 ZF 152 174

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bcin04g01650 Botrytis cinerea Bcin04g01650 N 0.000
PVAR5_3492 Byssochlamys spectabilis PVAR5_3492 N 0.000
PV05_09137 Exophiala xenobiotica PV05_09137 I 0.000
MBM_05066 Marssonina brunnea MBM_05066 N 0.000
PFICI_13136 Pestalotiopsis fici PFICI_13136 N 0.000
GMDG_04150 Pseudogymnoascus destructans GMDG_04150 N 0.000
V499_09156 Pseudogymnoascus pannorum V499_09156 N 0.000