Bra038293 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra038293 T081973_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.759 0.902
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra038293.1-P C2H2 ZF 142 163
Bra038293.1-P C2H2 ZF 164 188

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo3g129830 Brassica oleracea Bo3g129830 I 0.803
30128.m008580 Ricinus communis 30128.m008580 I 0.797
GLYMA11G15950 Glycine max GLYMA11G15950 I 0.797
AtIDD12 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6003159 I 0.792
PGSC0003DMG400003372 Solanum tuberosum PGSC0003DMG400003372 I 0.792
Bostr.2983s0191 Boechera stricta Bostr.2983s0191 I 0.792
Carubv10001008m.g Capsella rubella Carubv10001008m.g I 0.792
Cagra.0635s0013 Capsella grandiflora Cagra.0635s0013 I 0.792
Solyc06g075250.2 Solanum lycopersicum Solyc06g075250.2 I 0.792
LjSGA_017927.1 Lotus japonicus LjSGA_017927.1 I 0.792
PK25985.1 Cannabis sativa PK25985.1 I 0.792
ONIVA02G20290 Oryza nivara ONIVA02G20290 I 0.791
ORGLA02G0157900 Oryza glaberrima ORGLA02G0157900 I 0.791
OMERI02G18510 Oryza meridionalis OMERI02G18510 I 0.791
OPUNC02G16560 Oryza punctata OPUNC02G16560 I 0.791
OGLUM02G18620 Oryza glumaepatula OGLUM02G18620 I 0.791
LPERR02G14730 Leersia perrieri LPERR02G14730 I 0.791
OB02G26130 Oryza brachyantha OB02G26130 I 0.791
OBART02G18320 Oryza barthii OBART02G18320 I 0.791
ORUFI02G19290 Oryza rufipogon ORUFI02G19290 I 0.791
BGIOSGA006371 Oryza indica BGIOSGA006371 I 0.791
TRIUR3_32694 Triticum urartu TRIUR3_32694 I 0.791
Traes_4DL_DF1F43E16 Triticum aestivum Traes_4DL_DF1F43E16 I 0.791
Traes_4AS_F7A905B43 Triticum aestivum Traes_4AS_F7A905B43 I 0.791
Si019690m.g Setaria italica Si019690m.g I 0.791
Sb04g021440 Sorghum bicolor Sb04g021440 I 0.791
GRMZM2G320287 Zea mays GRMZM2G320287 I 0.791
Pavir.Ab01787 Panicum virgatum Pavir.Ab01787 I 0.791
Pavir.Aa01904 Panicum virgatum Pavir.Aa01904 I 0.791
OS02G0518500 Oryza sativa OS02G0518500 I 0.791
OLONG_013811 Oryza longistaminata OLONG_013811 I 0.791
F775_04344 Aegilops tauschii F775_04344 I 0.791
BRADI3G44520 Brachypodium distachyon BRADI3G44520 I 0.791
Traes_4BL_38E55D7B4 Triticum aestivum Traes_4BL_38E55D7B4 I 0.786
Gorai.005G198100 Gossypium raimondii Gorai.005G198100 I 0.778
POPTR_0327s00220 Populus trichocarpa POPTR_0327s00220 I 0.778
VIT_09s0054g01820 Vitis vinifera VIT_09s0054g01820 I 0.778
cassava21529.m1 Manihot esculenta cassava21529.m1 I 0.778
TCM_008261 Theobroma cacao TCM_008261 I 0.778
POPTR_0001s12770 Populus trichocarpa POPTR_0001s12770 I 0.778
Thhalv10002526m.g Eutrema salsugineum Thhalv10002526m.g I 0.774
Bra033840 Brassica rapa Bra033840 I 0.774
GLYMA12G07510 Glycine max GLYMA12G07510 I 0.774
IDD9 Arabidopsis thaliana AT3G45260 D 0.774
Thhalv10016023m.g Eutrema salsugineum Thhalv10016023m.g I 0.774
scaffold_501386.1 Arabidopsis lyrata scaffold_501386.1 I 0.774
Bostr.18473s0395 Boechera stricta Bostr.18473s0395 I 0.774
Bo1g065210 Brassica oleracea Bo1g065210 I 0.774
Bo2g167740 Brassica oleracea Bo2g167740 I 0.774
Thhalv10010353m.g Eutrema salsugineum Thhalv10010353m.g I 0.774
mgf001929m Mimulus guttatus mgf001929m I 0.774
Lus10007409.g Linum usitatissimum Lus10007409.g I 0.774
Lus10036116.g Linum usitatissimum Lus10036116.g I 0.774
Eucgr.B03566 Eucalyptus grandis Eucgr.B03566 I 0.772
VIT_06s0004g03070 Vitis vinifera VIT_06s0004g03070 I 0.768
Cucsa.222420 Cucumis sativus Cucsa.222420 I 0.768
Gorai.004G076800 Gossypium raimondii Gorai.004G076800 I 0.768
cassava832.valid.m1 Manihot esculenta cassava832.valid.m1 I 0.768
TCM_041053 Theobroma cacao TCM_041053 I 0.768
BGIOSGA003803 Oryza indica BGIOSGA003803 I 0.768
29643.m000323 Ricinus communis 29643.m000323 I 0.768
Gorai.006G120000 Gossypium raimondii Gorai.006G120000 I 0.768
cassava6007.valid.m1 Manihot esculenta cassava6007.valid.m1 I 0.768
Gorai.001G131000 Gossypium raimondii Gorai.001G131000 I 0.768
MDP0000233477 Malus domestica MDP0000233477 I 0.768
Cla005124 Citrullus lanatus Cla005124 I 0.768
Ca_14587 Cicer arietinum Ca_14587 I 0.768
orange1.1g011146m.g Citrus sinensis orange1.1g011146m.g I 0.768
MTR_4g059870 Medicago truncatula MTR_4g059870 I 0.768
Pavir.Ea01893 Panicum virgatum Pavir.Ea01893 I 0.768
Carubv10017213m.g Capsella rubella Carubv10017213m.g I 0.768
gene04812-v1.0-hybrid Fragaria vesca gene04812-v1.0-hybrid I 0.768
Ciclev10028294m.g Citrus clementina Ciclev10028294m.g I 0.768
PGSC0003DMG400015498 Solanum tuberosum PGSC0003DMG400015498 I 0.768
PGSC0003DMG400008110 Solanum tuberosum PGSC0003DMG400008110 I 0.768
Cagra.28200s0002 Capsella grandiflora Cagra.28200s0002 I 0.768
Solyc11g069240.1 Solanum lycopersicum Solyc11g069240.1 I 0.768
Solyc02g062940.2 Solanum lycopersicum Solyc02g062940.2 I 0.768
Eucgr.J00939 Eucalyptus grandis Eucgr.J00939 I 0.768
BRADI5G08537 Brachypodium distachyon BRADI5G08537 I 0.767
GSMUA_Achr2G08910_001 Musa acuminata GSMUA_Achr2G08910_001 I 0.764
PRUPE_ppa005468mg Prunus persica PRUPE_ppa005468mg I 0.764
Cucsa.306990 Cucumis sativus Cucsa.306990 I 0.764
PK06347.1 Cannabis sativa PK06347.1 I 0.764
Cucsa.084240 Cucumis sativus Cucsa.084240 I 0.764
Ca_07799 Cicer arietinum Ca_07799 I 0.764
MDP0000319344 Malus domestica MDP0000319344 I 0.764
Pm030100 Prunus mume Pm030100 I 0.764
Cla015029 Citrullus lanatus Cla015029 I 0.764
PRUPE_ppa003849mg Prunus persica PRUPE_ppa003849mg I 0.764
Cla018101 Citrullus lanatus Cla018101 I 0.764
gene20264-v1.0-hybrid Fragaria vesca gene20264-v1.0-hybrid I 0.764
Pm020252 Prunus mume Pm020252 I 0.764
mgf017113m Mimulus guttatus mgf017113m I 0.763
Bo9g021710 Brassica oleracea Bo9g021710 I 0.763
Eucgr.B02487 Eucalyptus grandis Eucgr.B02487 I 0.762
orange1.1g008017m.g Citrus sinensis orange1.1g008017m.g I 0.762
Ciclev10007837m.g Citrus clementina Ciclev10007837m.g I 0.762
LjT03L03.50.nd Lotus japonicus LjT03L03.50.nd I 0.759
gene09703-v1.0-hybrid Fragaria vesca gene09703-v1.0-hybrid I 0.759
evm.TU.supercontig_45.59 Carica papaya evm.TU.supercontig_45.59 I 0.759
evm.TU.supercontig_52.117 Carica papaya evm.TU.supercontig_52.117 I 0.759
MDP0000688613 Malus domestica MDP0000688613 I 0.759
SapurV1A.0209s0070 Salix purpurea SapurV1A.0209s0070 I 0.759
SapurV1A.0112s0130 Salix purpurea SapurV1A.0112s0130 I 0.759
SapurV1A.0006s1510 Salix purpurea SapurV1A.0006s1510 I 0.759
orange1.1g011807m.g Citrus sinensis orange1.1g011807m.g I 0.759
SapurV1A.5138s0010 Salix purpurea SapurV1A.5138s0010 I 0.759
Thhalv10013267m.g Eutrema salsugineum Thhalv10013267m.g I 0.759
PK18288.1 Cannabis sativa PK18288.1 I 0.759
Thhalv10028701m.g Eutrema salsugineum Thhalv10028701m.g I 0.759
chr1.CM0322.120.nc Lotus japonicus chr1.CM0322.120.nc I 0.759
orange1.1g011334m.g Citrus sinensis orange1.1g011334m.g I 0.759
MDP0000826293 Malus domestica MDP0000826293 I 0.759
Gorai.009G418600 Gossypium raimondii Gorai.009G418600 I 0.759
Gorai.008G002200 Gossypium raimondii Gorai.008G002200 I 0.759
Gorai.007G139800 Gossypium raimondii Gorai.007G139800 I 0.759
Lus10019927.g Linum usitatissimum Lus10019927.g I 0.759
Lus10026497.g Linum usitatissimum Lus10026497.g I 0.759
MDP0000480293 Malus domestica MDP0000480293 I 0.759
MDP0000243664 Malus domestica MDP0000243664 I 0.759
MDP0000122321 Malus domestica MDP0000122321 I 0.759
Gorai.006G167600 Gossypium raimondii Gorai.006G167600 I 0.759
Pm001002 Prunus mume Pm001002 I 0.759
PGSC0003DMG400001747 Solanum tuberosum PGSC0003DMG400001747 I 0.759
GLYMA19G36430 Glycine max GLYMA19G36430 I 0.759
GLYMA13G20231 Glycine max GLYMA13G20231 I 0.759
GLYMA10G05880 Glycine max GLYMA10G05880 I 0.759
PGSC0003DMG400010478 Solanum tuberosum PGSC0003DMG400010478 I 0.759
POPTR_0002s04880 Populus trichocarpa POPTR_0002s04880 I 0.759
Solyc09g007550.2 Solanum lycopersicum Solyc09g007550.2 I 0.759
PRUPE_ppa004548mg Prunus persica PRUPE_ppa004548mg I 0.759
POPTR_0016s08990 Populus trichocarpa POPTR_0016s08990 I 0.759
POPTR_0006s13130 Populus trichocarpa POPTR_0006s13130 I 0.759
GLYMA10G03541 Glycine max GLYMA10G03541 I 0.759
GLYMA03G31390 Glycine max GLYMA03G31390 I 0.759
Bo2g100660 Brassica oleracea Bo2g100660 I 0.759
Bo2g003880 Brassica oleracea Bo2g003880 I 0.759
JKD Arabidopsis thaliana AT5G03150 D 0.759
AMTR_s00007p00061550 Amborella trichopoda AMTR_s00007p00061550 I 0.759
Bo9g183170 Brassica oleracea Bo9g183170 I 0.759
Bra005741 Brassica rapa Bra005741 I 0.759
JKD Arabidopsis lyrata fgenesh2_kg.6__219__AT5G03150.1 I 0.759
Bra018535 Brassica rapa Bra018535 I 0.759
Bra009549 Brassica rapa Bra009549 I 0.759
Solyc10g084180.1 Solanum lycopersicum Solyc10g084180.1 I 0.759
TCM_004271 Theobroma cacao TCM_004271 I 0.759
Aquca_027_00051 Aquilegia coerulea Aquca_027_00051 I 0.759
mgf023281m Mimulus guttatus mgf023281m I 0.759
mgf003691m Mimulus guttatus mgf003691m I 0.759
cassava26767.m1 Manihot esculenta cassava26767.m1 I 0.759
Aquca_049_00144 Aquilegia coerulea Aquca_049_00144 I 0.759
Bostr.2128s0141 Boechera stricta Bostr.2128s0141 I 0.759
Ciclev10019959m.g Citrus clementina Ciclev10019959m.g I 0.759
Ciclev10011592m.g Citrus clementina Ciclev10011592m.g I 0.759
Carubv10000736m.g Capsella rubella Carubv10000736m.g I 0.759
Cagra.1597s0004 Capsella grandiflora Cagra.1597s0004 I 0.759
cassava24590.valid.m1 Manihot esculenta cassava24590.valid.m1 I 0.759
cassava20362.m1 Manihot esculenta cassava20362.m1 I 0.759
Ca_17124 Cicer arietinum Ca_17124 I 0.759
JKD Vitis vinifera VIT_08s0040g02100 I 0.759
VIT_00s0179g00170 Vitis vinifera VIT_00s0179g00170 I 0.759
TCM_022127 Theobroma cacao TCM_022127 I 0.759
Cla018558 Citrullus lanatus Cla018558 I 0.759
AMTR_s00002p00270520 Amborella trichopoda AMTR_s00002p00270520 I 0.759
cassava20187.m1 Manihot esculenta cassava20187.m1 I 0.759
Eucgr.A01159 Eucalyptus grandis Eucgr.A01159 I 0.759
30078.m002347 Ricinus communis 30078.m002347 I 0.759
29883.m001956 Ricinus communis 29883.m001956 I 0.759
GLYMA19G34220 Glycine max GLYMA19G34220 I 0.758