CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra040971
(
Brassica rapa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Bra040971
T081978_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.803
1.000
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.803
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra040971.1-P
C2H2 ZF
263
285
FTCSRCHTKKFSVIADLKTHEKH
Bra040971.1-P
C2H2 ZF
286
315
CGQNKWLCSCGTTFSRKDKLFGHIALFQGH
Links
Other
C2H2 ZF
family TFs
Other
Brassica rapa
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy