CBN30944 (Caenorhabditis brenneri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 CBN30944 T083095_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
che-1
M00609_2.00
Caenorhabditis elegans
NGAARCCHNN

NNDGGYTTCN
PBM
Narasimhan et al.(2015)
pTH10015
0.827 1.000
che-1
M08451_2.00
Caenorhabditis elegans
SGYTTC

GAARCS
COMPILED
Mathelier et al.(2014)
MA0260.1
0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN30944 C2H2 ZF 40 62
CBN30944 C2H2 ZF 68 90
CBN30944 C2H2 ZF 96 118
CBN30944 C2H2 ZF 124 146

Links

Other C2H2 ZF family TFs
Other Caenorhabditis brenneri TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.000
PRH Arabidopsis thaliana AT4G29940 I 0.000
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.000
Bo3g175850 Brassica oleracea Bo3g175850 I 0.000
Bo1g014710 Brassica oleracea Bo1g014710 I 0.000
Bra010310 Brassica rapa Bra010310 I 0.000
Bra011153 Brassica rapa Bra011153 I 0.000
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.000
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.000
Ca_08838 Cicer arietinum Ca_08838 I 0.000
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.000
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.000
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.000
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.000
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.000
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.000
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.000
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.000
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.000
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.000
mgf003961m Mimulus guttatus mgf003961m I 0.000
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.000
Pm008905 Prunus mume Pm008905 I 0.000
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.000
29671.m000294 Ricinus communis 29671.m000294 I 0.000
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.000
Solyc07g008730.1 Solanum lycopersicum Solyc07g008730.1 I 0.000
PGSC0003DMG400028740 Solanum tuberosum PGSC0003DMG400028740 I 0.000