CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CGI_10005451
(
Crassostrea gigas
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
CGI_10005451
T083424_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Kah
M03690_2.00
Drosophila melanogaster
NVCCACCTGTTN
NAACAGGTGGBN
SELEX
Nitta et al.(2015)
CG17181_1
0.773
0.841
Kah
M06137_2.00
Drosophila melanogaster
VCCACCTGT
ACAGGTGGB
B1H
Zhu et al.(2011)
CG17181_SANGER_5_FBgn0035144
0.773
0.841
Kah
M06138_2.00
Drosophila melanogaster
NVCCACCTGYHVVNN
NNBBDRCAGGTGGBN
B1H
Zhu et al.(2011)
CG17181_SOLEXA_5_FBgn0035144
0.773
0.841
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EKC27677
C2H2 ZF
263
285
YPCEECGKRYSTSSNLARHRQTH
EKC27677
C2H2 ZF
295
316
KCPHCEKVYVSMPAFSMHVRTH
EKC27677
C2H2 ZF
320
342
CECPYCGKRFSRPWLLQGHIRTH
EKC27677
C2H2 ZF
348
370
FDCPKCGKCFADKSNLRAHVQTH
EKC27677
C2H2 ZF
376
397
YVCGRCGKAFALKSYLYKHEES
Links
Other
C2H2 ZF
family TFs
Other
Crassostrea gigas
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy