CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CGI_10011355
(
Crassostrea gigas
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
CGI_10011355
T083471_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN
NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.781
0.819
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.781
0.819
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY
RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.781
0.819
GFI1B
M10243_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.781
0.819
GFI1B
M10244_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.781
0.819
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.781
0.819
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH
DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.779
0.812
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH
DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.779
0.812
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC
GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.779
0.812
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.778
0.848
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN
NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.775
0.819
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.775
0.819
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS
SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.775
0.819
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY
RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.775
0.819
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY
RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.775
0.819
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.775
0.819
GFI1
M10236_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.775
0.819
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN
NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.775
0.819
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.775
0.819
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN
NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.771
0.812
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EKC27912
C2H2 ZF
159
182
FECTKCNKFFSTPHGLEVHVRRSH
EKC27912
C2H2 ZF
188
210
YACEICNKTFGHAVSLDQHRIVH
EKC27912
C2H2 ZF
216
238
FECKQCGKCFKRSSTLSTHLLIH
EKC27912
C2H2 ZF
244
266
YPCPYCGKRFHQKSDMKKHTYIH
EKC27912
C2H2 ZF
272
294
HKCLQCGKAFSQSSNLITHSRKH
EKC27912
C2H2 ZF
300
323
FACEKCGRAFQRKVDQRRHVETQH
Links
Other
C2H2 ZF
family TFs
Other
Crassostrea gigas
TFs
137 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LotgiG129344
Lottia gigantea
LotgiG129344
I
0.805
e_gw.11.853.1
Branchiostoma floridae
e_gw.11.853.1
I
0.793
SPU_012645
Strongylocentrotus purpuratus
SPU_012645
I
0.788
tetur16g01570
Tetranychus urticae
tetur16g01570
I
0.787
Cmyd_10017172
Chelonia mydas
Cmyd_10017172
I
0.786
Gfo_R007994
Geospiza fortis
Gfo_R007994
I
0.785
ENSFALG00000001479
Ficedula albicollis
ENSFALG00000001479
I
0.785
GFI1B
Gallus gallus
ENSGALG00000003478
I
0.785
Aan_R008865
Calypte anna
Aan_R008865
I
0.785
gfi1ab
Takifugu rubripes
ENSTRUG00000000415
I
0.785
Afo_R001655
Aptenodytes forsteri
Afo_R001655
I
0.785
GFI1B
Meleagris gallopavo
ENSMGAG00000006129
I
0.785
ENSAMXG00000004835
Astyanax mexicanus
ENSAMXG00000004835
I
0.785
ENSAPLG00000003373
Anas platyrhynchos
ENSAPLG00000003373
I
0.785
GFI1B
Monodelphis domestica
ENSMODG00000012600
I
0.783
ENSPSIG00000012112
Pelodiscus sinensis
ENSPSIG00000012112
I
0.783
ENSSTOG00000022285
Ictidomys tridecemlineatus
ENSSTOG00000022285
I
0.782
Tal_R001363
Tyto alba
Tal_R001363
I
0.781
GFI1B
Homo sapiens
ENSG00000165702
D
0.781
GFI1B
Pan troglodytes
ENSPTRG00000021505
I
0.781
GFI1B
Gorilla gorilla
ENSGGOG00000015828
I
0.781
Gfi1b
Rattus norvegicus
ENSRNOG00000011353
I
0.781
GFI1B
Sus scrofa
ENSSSCG00000005737
I
0.781
ENSPPYG00000019718
Pongo abelii
ENSPPYG00000019718
I
0.781
GFI1B
Callithrix jacchus
ENSCJAG00000018071
I
0.781
GFI1B
Felis catus
ENSFCAG00000027147
I
0.781
GFI1B
Oryctolagus cuniculus
ENSOCUG00000001793
I
0.781
ENSNLEG00000012963
Nomascus leucogenys
ENSNLEG00000012963
I
0.781
gfi1ab
Tetraodon nigroviridis
ENSTNIG00000000651
I
0.781
GFI1B
Procavia capensis
ENSPCAG00000012329
I
0.781
ENSLACG00000012207
Latimeria chalumnae
ENSLACG00000012207
I
0.780
ENSPANG00000024216
Papio anubis
ENSPANG00000024216
I
0.779
ENSCSAG00000015008
Chlorocebus sabaeus
ENSCSAG00000015008
I
0.779
ENSP00000361195
Macaca fascicularis
ENSP00000361195
I
0.779
GFI1B
Equus caballus
ENSECAG00000008127
I
0.779
ENSMPUG00000012489
Mustela putorius furo
ENSMPUG00000012489
I
0.779
GFI1B
Canis familiaris
ENSCAFG00000019877
I
0.779
Gfi1b
Mus musculus
ENSMUSG00000026815
D
0.779
GFI1B
Dasypus novemcinctus
ENSDNOG00000036528
I
0.779
sens-2
Drosophila melanogaster
FBgn0051632
D
0.778
GJ21268
Drosophila virilis
FBgn0208401
I
0.778
GL26188
Drosophila persimilis
FBgn0163770
I
0.778
GM16223
Drosophila sechellia
FBgn0171139
I
0.778
GE14143
Drosophila yakuba
FBgn0231766
I
0.778
MDOA011065
Musca domestica
MDOA011065
I
0.778
GI23984
Drosophila mojavensis
FBgn0146708
I
0.778
GH13715
Drosophila grimshawi
FBgn0121191
I
0.778
GG10437
Drosophila erecta
FBgn0102746
I
0.778
GF15430
Drosophila ananassae
FBgn0092455
I
0.778
GK24242
Drosophila willistoni
FBgn0226203
I
0.778
GFI1B
Cavia porcellus
ENSCPOG00000026928
I
0.778
GA16348
Drosophila pseudoobscura
FBgn0076363
I
0.778
ENSONIG00000019246
Oreochromis niloticus
ENSONIG00000019246
I
0.777
gfi1aa
Danio rerio
ENSDARG00000020746
I
0.777
LotgiG83709
Lottia gigantea
LotgiG83709
I
0.777
GFI1
Tursiops truncatus
ENSTTRG00000000082
I
0.777
CGI_10017941
Crassostrea gigas
CGI_10017941
I
0.777
GFI1
Equus caballus
ENSECAG00000006647
I
0.777
GFI1
Myotis lucifugus
ENSMLUG00000015191
I
0.777
ENSLACG00000013362
Latimeria chalumnae
ENSLACG00000013362
I
0.777
GFI1
Bos taurus
ENSBTAG00000016723
I
0.777
GFI1
Sus scrofa
ENSSSCG00000006902
I
0.777
GFI1
Pteropus vampyrus
ENSPVAG00000006928
I
0.777
GFI1B
Loxodonta africana
ENSLAFG00000022367
I
0.776
Gfi1
Rattus norvegicus
ENSRNOG00000002042
D
0.775
ENSPANG00000016433
Papio anubis
ENSPANG00000016433
I
0.775
ENSSTOG00000014583
Ictidomys tridecemlineatus
ENSSTOG00000014583
I
0.775
ENSPFOG00000023214
Poecilia formosa
ENSPFOG00000023214
I
0.775
GFI1
Monodelphis domestica
ENSMODG00000011802
I
0.775
GFI1
Felis catus
ENSFCAG00000005914
I
0.775
GFI1
Canis familiaris
ENSCAFG00000020155
I
0.775
GFI1
Homo sapiens
ENSG00000162676
D
0.775
Ogr09401
Ophisaurus gracilis
Ogr09401
I
0.775
GFI1
Gorilla gorilla
ENSGGOG00000005320
I
0.775
GFI1
Erinaceus europaeus
ENSEEUG00000000198
I
0.775
GFI1
Callithrix jacchus
ENSCJAG00000017609
I
0.775
Ocbimv22002861m.g
Octopus bimaculoides
Ocbimv22002861m.g
N
0.775
gfi1ab
Danio rerio
ENSDARG00000044457
I
0.775
gfi1b
Danio rerio
ENSDARG00000079947
I
0.775
GFI1
Dasypus novemcinctus
ENSDNOG00000000782
I
0.775
gfi1
Xenopus tropicalis
XB-GENE-960553
I
0.775
ENSGMOG00000017295
Gadus morhua
ENSGMOG00000017295
I
0.775
ENSNLEG00000010470
Nomascus leucogenys
ENSNLEG00000010470
I
0.775
Gfi1
Mus musculus
ENSMUSG00000029275
D
0.775
GFI1B
Ornithorhynchus anatinus
ENSOANG00000014723
I
0.775
GFI1
Otolemur garnettii
ENSOGAG00000027913
I
0.775
GFI1
Anolis carolinensis
ENSACAG00000004498
I
0.775
ENSMPUG00000004178
Mustela putorius furo
ENSMPUG00000004178
I
0.775
ENSAMEG00000013858
Ailuropoda melanoleuca
ENSAMEG00000013858
I
0.775
GFI1
Loxodonta africana
ENSLAFG00000018346
I
0.775
ENSLOCG00000004711
Lepisosteus oculatus
ENSLOCG00000004711
I
0.775
ENSLOCG00000005750
Lepisosteus oculatus
ENSLOCG00000005750
I
0.775
ENSMMUG00000005068
Macaca mulatta
ENSMMUG00000005068
I
0.775
GFI1
Ochotona princeps
ENSOPRG00000001473
I
0.775
gfi1aa
Oryzias latipes
ENSORLG00000005060
I
0.774
ENSPFOG00000017327
Poecilia formosa
ENSPFOG00000017327
I
0.774
ENSXMAG00000009274
Xiphophorus maculatus
ENSXMAG00000009274
I
0.774
ENSONIG00000010573
Oreochromis niloticus
ENSONIG00000010573
I
0.774
Cmyd_10004881
Chelonia mydas
Cmyd_10004881
I
0.773
Alligator_sinensis_CCG007476.1
Alligator sinensis
Alligator_sinensis_CCG007476.1
I
0.773
ENSGMOG00000019123
Gadus morhua
ENSGMOG00000019123
I
0.773
Afo_R006147
Aptenodytes forsteri
Afo_R006147
I
0.773
ENSGMOG00000007737
Gadus morhua
ENSGMOG00000007737
I
0.773
ENSBTAP00000022231-D1
Bos grunniens
ENSBTAP00000022231-D1
I
0.773
Tal_R006464
Tyto alba
Tal_R006464
I
0.773
ENSAPLG00000015700
Anas platyrhynchos
ENSAPLG00000015700
I
0.773
Gfo_R010648
Geospiza fortis
Gfo_R010648
I
0.773
gfi1b
Gasterosteus aculeatus
ENSGACG00000018134
I
0.773
ENSGALG00000005940
Gallus gallus
ENSGALG00000005940
I
0.773
GFI1
Meleagris gallopavo
ENSMGAG00000008187
I
0.773
Brh_R002465
Buceros rhinoceros
Brh_R002465
I
0.773
Aan_R000889
Calypte anna
Aan_R000889
I
0.773
GFI1
Taeniopygia guttata
ENSTGUG00000006060
I
0.773
ENSPSIG00000008734
Pelodiscus sinensis
ENSPSIG00000008734
I
0.773
GFI1B
Otolemur garnettii
ENSOGAG00000008879
I
0.773
GFI1
Cavia porcellus
ENSCPOG00000011727
I
0.772
gfi1aa
Takifugu rubripes
ENSTRUG00000004744
I
0.772
Pvit_00259
Pogona vitticeps
Pvit_00259
I
0.772
Sakowv30015313m.g
Saccoglossus kowalevskii
Sakowv30015313m.g
I
0.772
Gfi1b
Dipodomys ordii
ENSDORG00000000342
I
0.771
ENSP00000399719
Macaca fascicularis
ENSP00000399719
I
0.771
CapteG45287
Capitella teleta
CapteG45287
I
0.771
GFI1B
Bos taurus
ENSBTAG00000012772
I
0.769
GFI1B
Macaca mulatta
ENSMMUG00000005948
I
0.769
ENSBTAP00000016974-D1
Bos grunniens
ENSBTAP00000016974-D1
I
0.769
gfi1ab
Gasterosteus aculeatus
ENSGACG00000004257
I
0.767
gfi1aa
Gasterosteus aculeatus
ENSGACG00000015674
I
0.767
GFI1B
Myotis lucifugus
ENSMLUG00000006673
I
0.766
gfi1b
Xenopus tropicalis
XB-GENE-944426
I
0.763
ENSONIG00000013011
Oreochromis niloticus
ENSONIG00000013011
I
0.763
gfi1b.L
Xenopus laevis
XB-GENE-944429
I
0.763
Myotis_brandtii_GFI1B_10010118
Myotis brandtii
Myotis_brandtii_GFI1B_10010118
I
0.762
gfi1b
Tetraodon nigroviridis
ENSTNIG00000003834
I
0.761
gfi1b
Oryzias latipes
ENSORLG00000014390
I
0.761
gfi1b
Takifugu rubripes
ENSTRUG00000004525
I
0.761
Sakowv30015302m.g
Saccoglossus kowalevskii
Sakowv30015302m.g
I
0.760
NEMVEDRAFT_v1g182742
Nematostella vectensis
NEMVEDRAFT_v1g182742
I
0.759