CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CGI_10011936
(
Crassostrea gigas
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
CGI_10011936
T083478_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gl
M03671_2.00
Drosophila melanogaster
RTTACCATACAAGTGCAV
BTGCACTTGTATGGTAAY
SELEX
Nitta et al.(2015)
gl_1
0.794
0.904
gl
M06078_2.00
Drosophila melanogaster
DAYNCWTBAAAT
ATTTVAWGNRTH
B1H
Zhu et al.(2011)
gl_FlyReg_FBgn0004618
0.794
0.904
gl
M06079_2.00
Drosophila melanogaster
TTRTABGGYTTC
GAARCCVTAYAA
B1H
Zhu et al.(2011)
gl_SANGER_5_FBgn0004618
0.794
0.904
gl
M06080_2.00
Drosophila melanogaster
NNBDWNTADGGCTTC
GAAGCCHTANWHVNN
B1H
Zhu et al.(2011)
gl_SOLEXA_5_FBgn0004618
0.794
0.904
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EKC25221
C2H2 ZF
229
250
LCRICGKTYARPSTLKTHLRTH
EKC25221
C2H2 ZF
256
278
YKCSTCSKSFSQAANLTAHTRTH
EKC25221
C2H2 ZF
284
306
FHCPMCDRRFSQSSSVTTHMRTH
EKC25221
C2H2 ZF
312
334
YRCRLCKKAFSDSSTLTKHLRIH
EKC25221
C2H2 ZF
340
362
YQCKLCLLRFSQSGNLNRHMRVH
Links
Other
C2H2 ZF
family TFs
Other
Crassostrea gigas
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy