CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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CGI_10012022
(
Crassostrea gigas
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
CGI_10012022
T083479_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Osr2
M00132_2.00
Mus musculus
NGCTWCYGNN
NNCRGWAGCN
PBM
Badis et al.(2009)
Osr2_1727
0.800
0.928
Osr1
M00144_2.00
Mus musculus
NVCTHCYNN
NNRGDAGBN
PBM
Badis et al.(2009)
Osr1_3033
0.784
0.913
Osr1
M01174_2.00
Mus musculus
GCTACYGT
ACRGTAGC
PBM
Lambert et al.(2019)
pTH5339
0.784
0.913
OSR1
M04477_2.00
Homo sapiens
NGCTACYGTD
HACRGTAGCN
SELEX
Yin et al.(2017)
OSR1_eDBD_HT-SELEX
0.784
0.913
OSR1
M04478_2.00
Homo sapiens
NGCTACYGTD
HACRGTAGCN
SELEX
Yin et al.(2017)
OSR1_eDBD_Methyl-HT-SELEX
0.784
0.913
odd-2
M00618_2.00
Caenorhabditis elegans
NGCTACYGK
MCRGTAGCN
PBM
Narasimhan et al.(2015)
pTH9150
0.770
0.841
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EKC18512
C2H2 ZF
115
137
FICKYCGRHFTKSYNLLIHERTH
EKC18512
C2H2 ZF
143
165
YPCEICGKAFRRQDHLRDHRYIH
EKC18512
C2H2 ZF
171
193
FKCMECGKGFCQSRTLAVHKTLH
Links
Other
C2H2 ZF
family TFs
Other
Crassostrea gigas
TFs
137 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy