CGI_10016116 (Crassostrea gigas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 CGI_10016116 T083521_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Zic5
M00780_2.00
Mus musculus
BRCCCCCYDS

SHRGGGGGYV
PBM
Weirauch et al.(2013)
pTH2818
0.786 0.855
ZIC5
M04471_2.00
Homo sapiens
NKACCCCCCGCTGHGH

DCDCAGCGGGGGGTMN
SELEX
Yin et al.(2017)
ZIC5_eDBD_HT-SELEX
0.786 0.855
ZIC5
M04472_2.00
Homo sapiens
NKACCCCCYGCTGTGM

KCACAGCRGGGGGTMN
SELEX
Yin et al.(2017)
ZIC5_eDBD_Methyl-HT-SELEX
0.786 0.855
Zic3
M00151_2.00
Mus musculus
NCMYVBNRNB

VNYNVBRKGN
PBM
Badis et al.(2009)
Zic3_3119
0.759 0.827
ZIC3
M02894_2.00
Homo sapiens
BACCCCCYGCKGYGH

DCRCMGCRGGGGGTV
SELEX
Jolma et al.(2013)
ZIC3_1
0.759 0.827
Zic3
M02936_2.00
Mus musculus
KRCCCCCYGCTGYGH

DCRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
Zic3_1
0.759 0.827
ZIC3
M04491_2.00
Homo sapiens
VGACCCCCYGCTGTGM

KCACAGCRGGGGGTCB
SELEX
Yin et al.(2017)
ZIC3_eDBD_HT-SELEX
0.759 0.827
ZIC3
M04493_2.00
Homo sapiens
BACCCCCYGCTGYGH

DCRCAGCRGGGGGTV
SELEX
Yin et al.(2017)
ZIC3_FL_HT-SELEX
0.759 0.827
ZIC3
M08902_2.00
Homo sapiens
NVVYHCCTGCTGDGN

NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_HUMAN.H11MO.0.B
0.759 0.827
Zic3
M09013_2.00
Mus musculus
NVVYHCCTGCTGDGN

NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_MOUSE.H11MO.0.A
0.759 0.827
ZIC3
M10229_2.00
Homo sapiens
VRBCMCCCN

NGGGKGVYB
Transfac
Matys et al.(2006)
V$ZIC3_01
0.759 0.827
Zic3
M10359_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC3_07
0.759 0.827
ZIC3
M04492_2.00
Homo sapiens
NKACCCCCTGCTGTGM

KCACAGCAGGGGGTMN
SELEX
Yin et al.(2017)
ZIC3_eDBD_Methyl-HT-SELEX
0.759 0.827
ZIC3
M04494_2.00
Homo sapiens
BRCCCCCTGCTGTGM

KCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC3_FL_Methyl-HT-SELEX
0.759 0.827
Zic1
M00137_2.00
Mus musculus
NCMYVBNGNK

MNCNVBRKGN
PBM
Badis et al.(2009)
Zic1_0991
0.758 0.855
ZIC1
M02893_2.00
Homo sapiens
KRCCCCCYGCTGYG

CRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC1_1
0.758 0.855
ZIC1
M04485_2.00
Homo sapiens
BVCCMCCYGYHGYGH

DCRCDRCRGGKGGBV
SELEX
Yin et al.(2017)
ZIC1_eDBD_HT-SELEX
0.758 0.855
ZIC1
M04487_2.00
Homo sapiens
BVCCCCCYGCTGYGH

DCRCAGCRGGGGGBV
SELEX
Yin et al.(2017)
ZIC1_FL_HT-SELEX
0.758 0.855
ZIC1
M08900_2.00
Homo sapiens
BMSCHCCCM

KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_HUMAN.H11MO.0.B
0.758 0.855
Zic1
M08990_2.00
Mus musculus
BMSCHCCCM

KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_MOUSE.H11MO.0.B
0.758 0.855
ZIC1
M10226_2.00
Homo sapiens
KRCNMMCYV

BRGKKNGTM
Transfac
Matys et al.(2006)
V$ZIC1_01
0.758 0.855
ZIC1
M10227_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC1_Q2
0.758 0.855
ZIC1
M04486_2.00
Homo sapiens
BACCCCCYRCTGTGM

KCACAGYRGGGGGTV
SELEX
Yin et al.(2017)
ZIC1_eDBD_Methyl-HT-SELEX
0.758 0.855
ZIC1
M04488_2.00
Homo sapiens
BRCCCCCTGCTGTGH

DCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC1_FL_Methyl-HT-SELEX
0.758 0.855
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC32445 C2H2 ZF 203 221
EKC32445 C2H2 ZF 230 257
EKC32445 C2H2 ZF 263 287
EKC32445 C2H2 ZF 293 317
EKC32445 C2H2 ZF 323 347

Links

Other C2H2 ZF family TFs
Other Crassostrea gigas TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
zic5 Xenopus tropicalis XB-GENE-480775 I 0.796
zic5.S Xenopus laevis XB-GENE-865408 I 0.792
ENSPSIG00000009089 Pelodiscus sinensis ENSPSIG00000009089 I 0.790
ZIC5 Monodelphis domestica ENSMODG00000007733 I 0.788
ENSMEUG00000004592 Macropus eugenii ENSMEUG00000004592 I 0.788
CapteG160442 Capitella teleta CapteG160442 I 0.787
ZIC5 Macaca mulatta ENSMMUG00000014821 I 0.786
ZIC5 Homo sapiens ENSG00000139800 D 0.786
ZIC5 Dasypus novemcinctus ENSDNOG00000046390 I 0.786
ZIC5 Erinaceus europaeus ENSEEUG00000002965 I 0.786
ZIC5 Gorilla gorilla ENSGGOG00000022385 I 0.786
ENSPANG00000018055 Papio anubis ENSPANG00000018055 I 0.786
Zic5 Rattus norvegicus ENSRNOG00000014358 I 0.786
ENSSTOG00000027399 Ictidomys tridecemlineatus ENSSTOG00000027399 I 0.786
ENSPTRG00000034285 Pan troglodytes ENSPTRG00000034285 I 0.786
ZIC5 Procavia capensis ENSPCAG00000011845 I 0.786
ENSCSAG00000017495 Chlorocebus sabaeus ENSCSAG00000017495 I 0.786
ENSNLEG00000007807 Nomascus leucogenys ENSNLEG00000007807 I 0.786
ENSOARG00000004385 Ovis aries ENSOARG00000004385 I 0.786
ZIC5 Canis familiaris ENSCAFG00000005834 I 0.786
ENSCJAG00000020987 Callithrix jacchus ENSCJAG00000020987 I 0.786
ENSAMEG00000004500 Ailuropoda melanoleuca ENSAMEG00000004500 I 0.786
ENSAMXG00000002323 Astyanax mexicanus ENSAMXG00000002323 I 0.784
ENSLOCG00000003087 Lepisosteus oculatus ENSLOCG00000003087 I 0.784
zic5 Danio rerio ENSDARG00000016022 I 0.784
SPU_028583 Strongylocentrotus purpuratus SPU_028583 I 0.783
Pvit_14046 Pogona vitticeps Pvit_14046 I 0.783
SPU_030070 Strongylocentrotus purpuratus SPU_030070 I 0.783
ENSONIG00000006787 Oreochromis niloticus ENSONIG00000006787 I 0.779
zic5 Takifugu rubripes ENSTRUG00000011797 I 0.779
ENSXMAG00000010996 Xiphophorus maculatus ENSXMAG00000010996 I 0.779
zic5 Tetraodon nigroviridis ENSTNIG00000014980 I 0.779
ENSPFOG00000012158 Poecilia formosa ENSPFOG00000012158 I 0.779
zic5 Oryzias latipes ENSORLG00000011124 I 0.779
ENSTGUG00000008837 Taeniopygia guttata ENSTGUG00000008837 I 0.774
ENSMODG00000021250 Monodelphis domestica ENSMODG00000021250 I 0.772
ENSPSIG00000004881 Pelodiscus sinensis ENSPSIG00000004881 I 0.772
SMAR005380 Strigamia maritima SMAR005380 I 0.771
estExt_gwp.C_400285 Branchiostoma floridae estExt_gwp.C_400285 I 0.771
LotgiG193238 Lottia gigantea LotgiG193238 I 0.770
Alligator_sinensis_CCG012205.1 Alligator sinensis Alligator_sinensis_CCG012205.1 I 0.770
ENSFALG00000007091 Ficedula albicollis ENSFALG00000007091 I 0.770
ENSMEUG00000009632 Macropus eugenii ENSMEUG00000009632 I 0.770
Pvit_01478 Pogona vitticeps Pvit_01478 I 0.770
zic4.L Xenopus laevis XB-GENE-1033019 I 0.770
zic4 Xenopus tropicalis XB-GENE-1033015 I 0.770
Ogr15027 Ophisaurus gracilis Ogr15027 I 0.770
ENSLACG00000008525 Latimeria chalumnae ENSLACG00000008525 I 0.770
ENSSHAG00000015091 Sarcophilus harrisii ENSSHAG00000015091 I 0.770
PHUM303860 Pediculus humanus PHUM303860 I 0.769
L798_08424 Zootermopsis nevadensis L798_08424 I 0.769
ENSPFOG00000014007 Poecilia formosa ENSPFOG00000014007 I 0.764
zic4 Oryzias latipes ENSORLG00000010055 I 0.764
zic4 Takifugu rubripes ENSTRUG00000017765 I 0.764
zic4 Tetraodon nigroviridis ENSTNIG00000012759 I 0.764
zic4 Gasterosteus aculeatus ENSGACG00000003685 I 0.764
ENSONIG00000005878 Oreochromis niloticus ENSONIG00000005878 I 0.764
ENSXMAG00000009162 Xiphophorus maculatus ENSXMAG00000009162 I 0.764
ENSGMOG00000001798 Gadus morhua ENSGMOG00000001798 I 0.764
zic4 Danio rerio ENSDARG00000031307 I 0.764
ENSAMXG00000010941 Astyanax mexicanus ENSAMXG00000010941 I 0.764
ENSLOCG00000007717 Lepisosteus oculatus ENSLOCG00000007717 I 0.762
ENSECAG00000013406 Equus caballus ENSECAG00000013406 I 0.761
ZIC4 Ornithorhynchus anatinus ENSOANG00000007364 I 0.760
Zic3 Rattus norvegicus ENSRNOG00000000861 I 0.759
ENSDORG00000014318 Dipodomys ordii ENSDORG00000014318 I 0.759
ZIC3 Pteropus vampyrus ENSPVAG00000011652 I 0.759
ENSPSIG00000011896 Pelodiscus sinensis ENSPSIG00000011896 I 0.759
zic3 Xenopus tropicalis XB-GENE-480431 I 0.759
zic3.S Xenopus laevis XB-GENE-865376 I 0.759
ENSPANG00000011357 Papio anubis ENSPANG00000011357 I 0.759
ZIC3 Equus caballus ENSECAG00000013318 I 0.759
ENSCSAG00000007453 Chlorocebus sabaeus ENSCSAG00000007453 I 0.759
Myotis_brandtii_ZIC3_10005513 Myotis brandtii Myotis_brandtii_ZIC3_10005513 I 0.759
ZIC3 Dasypus novemcinctus ENSDNOG00000006192 I 0.759
ENSP00000287538 Macaca fascicularis ENSP00000287538 I 0.759
ENSP00000287538-D1 Bos grunniens ENSP00000287538-D1 I 0.759
Alligator_sinensis_CCG005717.1 Alligator sinensis Alligator_sinensis_CCG005717.1 I 0.759
ENSTSYG00000003356 Tarsius syrichta ENSTSYG00000003356 I 0.759
ENSCPOG00000002374 Cavia porcellus ENSCPOG00000002374 I 0.759
ENSSTOG00000024153 Ictidomys tridecemlineatus ENSSTOG00000024153 I 0.759
ENSAMEG00000002684 Ailuropoda melanoleuca ENSAMEG00000002684 I 0.759
ZIC3 Taeniopygia guttata ENSTGUG00000002155 I 0.759
Aan_R004772 Calypte anna Aan_R004772 I 0.759
ZIC3 Sus scrofa ENSSSCG00000012705 I 0.759
ENSPPYG00000020775 Pongo abelii ENSPPYG00000020775 I 0.759
ZIC3 Monodelphis domestica ENSMODG00000014029 I 0.759
ZIC3 Gorilla gorilla ENSGGOG00000011914 I 0.759
ENSMPUG00000001786 Mustela putorius furo ENSMPUG00000001786 I 0.759
ENSGALG00000006497 Gallus gallus ENSGALG00000006497 I 0.759
ENSNLEG00000003005 Nomascus leucogenys ENSNLEG00000003005 I 0.759
ZIC3 Bos taurus ENSBTAG00000021413 I 0.759
ENSFALG00000003772 Ficedula albicollis ENSFALG00000003772 I 0.759
ZIC3 Canis familiaris ENSCAFG00000018979 I 0.759
ZIC3 Loxodonta africana ENSLAFG00000007048 I 0.759
ENSMEUG00000014290 Macropus eugenii ENSMEUG00000014290 I 0.759
ENSMICG00000010339 Microcebus murinus ENSMICG00000010339 I 0.759
ZIC3 Myotis lucifugus ENSMLUG00000011691 I 0.759
ENSAPLG00000010556 Anas platyrhynchos ENSAPLG00000010556 I 0.759
Zic3 Mus musculus ENSMUSG00000067860 D 0.759
ZIC3 Oryctolagus cuniculus ENSOCUG00000009358 I 0.759
ZIC3 Otolemur garnettii ENSOGAG00000011700 I 0.759
ZIC3 Echinops telfairi ENSETEG00000018846 I 0.759
ZIC3 Callithrix jacchus ENSCJAG00000013792 I 0.759
ZIC3 Felis catus ENSFCAG00000025684 I 0.759
ENSOARG00000010774 Ovis aries ENSOARG00000010774 I 0.759
ZIC3 Homo sapiens ENSG00000156925 D 0.759
Alligator_sinensis_CCG012204.1 Alligator sinensis Alligator_sinensis_CCG012204.1 I 0.758
ZIC1 Callithrix jacchus ENSCJAG00000001524 I 0.758
Pvit_01479 Pogona vitticeps Pvit_01479 I 0.758
ZIC1 Felis catus ENSFCAG00000007061 I 0.758
XP_002937379 Xenopus tropicalis XP_002937379 I 0.758
Aan_R013349 Calypte anna Aan_R013349 I 0.758
ENSGMOG00000001788 Gadus morhua ENSGMOG00000001788 I 0.758
ZIC1 Anolis carolinensis ENSACAG00000006947 I 0.758
Cmyd_10020767 Chelonia mydas Cmyd_10020767 I 0.758
ENSAMEG00000002149 Ailuropoda melanoleuca ENSAMEG00000002149 I 0.758
ZIC1 Gorilla gorilla ENSGGOG00000001101 I 0.758
Gfo_R005436 Geospiza fortis Gfo_R005436 I 0.758
Myotis_brandtii_ZIC1_10009541 Myotis brandtii Myotis_brandtii_ZIC1_10009541 I 0.758
zic1 Danio rerio ENSDARG00000015567 I 0.758
ZIC1 Homo sapiens ENSG00000152977 D 0.758
Ogr15030 Ophisaurus gracilis Ogr15030 I 0.758
ENSGALG00000006811 Gallus gallus ENSGALG00000006811 I 0.758
ENSP00000282928 Macaca fascicularis ENSP00000282928 I 0.758
zic1 Gasterosteus aculeatus ENSGACG00000003678 I 0.758
ENSP00000282928-D1 Bos grunniens ENSP00000282928-D1 I 0.758
ZIC1 Tursiops truncatus ENSTTRG00000014350 I 0.758
ZIC1 Pan troglodytes ENSPTRG00000015501 I 0.758
ENSOARG00000005434 Ovis aries ENSOARG00000005434 I 0.758
ZIC1 Bos taurus ENSBTAG00000014751 I 0.758
Zic1 Rattus norvegicus ENSRNOG00000014644 I 0.758
ENSAMXG00000010931 Astyanax mexicanus ENSAMXG00000010931 I 0.758
ENSPSIG00000005002 Pelodiscus sinensis ENSPSIG00000005002 I 0.758
ENSPANG00000005804 Papio anubis ENSPANG00000005804 I 0.758
ENSAPLG00000002960 Anas platyrhynchos ENSAPLG00000002960 I 0.758
ZIC1 Otolemur garnettii ENSOGAG00000007465 I 0.758
ENSFALG00000007094 Ficedula albicollis ENSFALG00000007094 I 0.758
ENSNLEG00000002407 Nomascus leucogenys ENSNLEG00000002407 I 0.758
ZIC1 Sus scrofa ENSSSCG00000011692 I 0.758
ENSCSAG00000011409 Chlorocebus sabaeus ENSCSAG00000011409 I 0.758
ZIC1 Macaca mulatta ENSMMUG00000004742 I 0.758
ZIC1 Microcebus murinus ENSMICG00000014401 I 0.758
ENSLOCG00000007706 Lepisosteus oculatus ENSLOCG00000007706 I 0.758
ZIC1 Loxodonta africana ENSLAFG00000030632 I 0.758
zic1 Takifugu rubripes ENSTRUG00000017760 I 0.758
ZIC1 Dasypus novemcinctus ENSDNOG00000047101 I 0.758
ENSSTOG00000000952 Ictidomys tridecemlineatus ENSSTOG00000000952 I 0.758
ENSMPUG00000011764 Mustela putorius furo ENSMPUG00000011764 I 0.758
Zic1 Mus musculus ENSMUSG00000032368 D 0.758
ZIC1 Taeniopygia guttata ENSTGUG00000008838 I 0.758
ENSLACG00000014597 Latimeria chalumnae ENSLACG00000014597 I 0.757
zic1 Oryzias latipes ENSORLG00000010050 I 0.757
ENSGALG00000006810 Gallus gallus ENSGALG00000006810 I 0.756