CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CGI_10027862
(
Crassostrea gigas
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
CGI_10027862
T083623_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YY1
M08237_2.00
Homo sapiens
VNVGCVGCCATBTTD
HAAVATGGCBGCBNB
ChIP-seq
Najafabadi et al.(2015b)
YY1
0.815
0.978
YY1
M02877_2.00
Homo sapiens
NVSRCCATNDH
DHNATGGYSBN
SELEX
Jolma et al.(2013)
YY1_1
0.815
0.967
YY1
M04406_2.00
Homo sapiens
NDCCATYTTKRRBNDWNHGTGCK
MGCACDNWHNVYYMAARATGGHN
SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_1
0.815
0.967
YY1
M04407_2.00
Homo sapiens
NKMCGCCATYTTGN
NCAARATGGCGKMN
SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_2
0.815
0.967
YY1
M05845_2.00
Homo sapiens
NNNVGCCATNWYD
HRWNATGGCBNNN
SMiLE-seq
Isakova et al.(2017)
YY1
0.815
0.967
YY1
M08288_2.00
Homo sapiens
GCCGCCATBKYB
VRMVATGGCGGC
ChIP-seq
Schmitges et al.(2016)
P25490_1-4.RCADE
0.815
0.967
YY1
M08085_2.00
Homo sapiens
KCVGCCATBTTK
MAAVATGGCBGM
ChIP-seq
Mathelier et al.(2014)
MA0095.2
0.815
0.967
YY1
M07855_2.00
Homo sapiens
VNVGCCGCCATBTTK
MAAVATGGCGGCBNB
ChIP-seq
Gerstein et al.(2012)
GM12878_YY1_HudsonAlpha
0.815
0.967
YY1
M07856_2.00
Homo sapiens
GCSGCCATBTT
AAVATGGCSGC
ChIP-seq
Gerstein et al.(2012)
GM12891_YY1_HudsonAlpha
0.815
0.967
YY1
M07857_2.00
Homo sapiens
BSNVGCSGCCATBTT
AAVATGGCSGCBNSV
ChIP-seq
Gerstein et al.(2012)
GM12892_YY1_HudsonAlpha
0.815
0.967
YY1
M07858_2.00
Homo sapiens
NNVGCSGCCATBTTK
MAAVATGGCSGCBNN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_YY1_HudsonAlpha
0.815
0.967
YY1
M07859_2.00
Homo sapiens
SBSGCSGCCATBTTK
MAAVATGGCSGCSVS
ChIP-seq
Gerstein et al.(2012)
K562b_YY1_UCD
0.815
0.967
YY1
M07860_2.00
Homo sapiens
GCCGCCATBTTKNNN
NNNMAAVATGGCGGC
ChIP-seq
Gerstein et al.(2012)
K562_YY1_HudsonAlpha
0.815
0.967
YY1
M07861_2.00
Homo sapiens
VGCSGCCATBTTK
MAAVATGGCSGCB
ChIP-seq
Gerstein et al.(2012)
NT2-D1_YY1_UCD
0.815
0.967
YY1
M08865_2.00
Homo sapiens
GCCGCCATYTTK
MAARATGGCGGC
Misc
Kulakovskiy et al.(2013)
TYY1_HUMAN.H11MO.0.A
0.815
0.967
Yy1
M08971_2.00
Mus musculus
GCCGCCATBTTB
VAAVATGGCGGC
Misc
Kulakovskiy et al.(2013)
TYY1_MOUSE.H11MO.0.A
0.815
0.967
YY1
M10138_2.00
Homo sapiens
NVNNDCCATNTWNNVWN
NWBNNWANATGGHNNBN
Transfac
Matys et al.(2006)
V$YY1_01
0.815
0.967
YY1
M10139_2.00
Homo sapiens
NNNSBGCCATCTDSNHTSND
HNSADNSHAGATGGCVSNNN
Transfac
Matys et al.(2006)
V$YY1_02
0.815
0.967
YY1
M10140_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_03
0.815
0.967
YY1
M10141_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_07
0.815
0.967
YY1
M10142_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_08
0.815
0.967
YY1
M10143_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q4_01
0.815
0.967
YY1
M10144_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6_02
0.815
0.967
YY1
M10145_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6_03
0.815
0.967
YY1
M10146_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY1_Q6
0.815
0.967
YY1
M04408_2.00
Homo sapiens
NDCCATYTTKRRCDDWWHGTGCY
RGCACDWWHHGYYMAARATGGHN
SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_1
0.815
0.967
YY1
M04409_2.00
Homo sapiens
RKCSGCCATYTTGD
HCAARATGGCSGMY
SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_2
0.815
0.967
TYY2_RAT
M10385_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YY2
0.804
0.891
pho
M06053_2.00
Drosophila melanogaster
KNVGCCATDAHNSY
RSNDTHATGGCBNM
B1H
Zhu et al.(2011)
pho_FlyReg_FBgn0002521
0.797
0.924
pho
M06054_2.00
Drosophila melanogaster
KCCGCCATHWTK
MAWDATGGCGGM
B1H
Zhu et al.(2011)
pho_SANGER_10_FBgn0002521
0.797
0.924
pho
M06055_2.00
Drosophila melanogaster
NKBCGCCATHWTKNN
NNMAWDATGGCGVMN
B1H
Zhu et al.(2011)
pho_SOLEXA_5_FBgn0002521
0.797
0.924
phol
M06144_2.00
Drosophila melanogaster
CGCCATHTTK
MAADATGGCG
B1H
Zhu et al.(2011)
phol_SANGER_5_FBgn0035997
0.767
0.826
phol
M06145_2.00
Drosophila melanogaster
NKNCGCCATNTTKNN
NNMAANATGGCGNMN
B1H
Zhu et al.(2011)
phol_SOLEXA_5_FBgn0035997
0.767
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EKC40213
C2H2 ZF
226
250
VPCPHKGCSKMFRDNSAMRKHLHTH
EKC40213
C2H2 ZF
255
277
HVCAECGKAFVESSKLKRHQLVH
EKC40213
C2H2 ZF
283
307
FQCTFEGCGKRFSLDFNLRTHVRIH
EKC40213
C2H2 ZF
313
337
YVCPFDGCNKKFAQSTNLKSHILTH
Links
Other
C2H2 ZF
family TFs
Other
Crassostrea gigas
TFs
164 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ocbimv22034269m.g
Octopus bimaculoides
Ocbimv22034269m.g
I
0.827
CapteG223122
Capitella teleta
CapteG223122
I
0.827
LotgiG64240
Lottia gigantea
LotgiG64240
I
0.827
GB49343
Apis mellifera
GB49343
I
0.815
HMEL010415
Heliconius melpomene
HMEL010415
I
0.815
CpipJ_CPIJ014689
Culex pipiens
CpipJ_CPIJ014689
I
0.815
ENSXMAG00000013413
Xiphophorus maculatus
ENSXMAG00000013413
I
0.815
SPU_010295
Strongylocentrotus purpuratus
SPU_010295
I
0.815
KGM_02499
Danaus plexippus
KGM_02499
I
0.815
L798_03352
Zootermopsis nevadensis
L798_03352
I
0.815
RPRC009167
Rhodnius prolixus
RPRC009167
I
0.815
NV10061
Nasonia vitripennis
NV10061
I
0.815
SMAR005684
Strigamia maritima
SMAR005684
I
0.815
ENSXMAG00000008440
Xiphophorus maculatus
ENSXMAG00000008440
I
0.815
SINV16765
Solenopsis invicta
SINV16765
I
0.815
YY2
Takifugu rubripes
ENSTRUG00000010532
I
0.815
ENSPPYG00000025949
Pongo abelii
ENSPPYG00000025949
I
0.815
ENSPSIG00000016003
Pelodiscus sinensis
ENSPSIG00000016003
I
0.815
ENSPMAG00000006025
Petromyzon marinus
ENSPMAG00000006025
I
0.815
ENSPFOG00000007704
Poecilia formosa
ENSPFOG00000007704
I
0.815
ENSPFOG00000002300
Poecilia formosa
ENSPFOG00000002300
I
0.815
YY1
Pan troglodytes
ENSPTRG00000006717
I
0.815
Yy1
Rattus norvegicus
ENSRNOG00000004339
I
0.815
yy1a
Tetraodon nigroviridis
ENSTNIG00000017334
I
0.815
YY2
Tetraodon nigroviridis
ENSTNIG00000010738
I
0.815
ENSTGUG00000012753
Taeniopygia guttata
ENSTGUG00000012753
I
0.815
ENSSHAG00000014750
Sarcophilus harrisii
ENSSHAG00000014750
I
0.815
TC015577
Tribolium castaneum
TC015577
I
0.815
Aan_R011513
Calypte anna
Aan_R011513
I
0.815
yy1.L
Xenopus laevis
XB-GENE-6254435
I
0.815
yy1
Xenopus tropicalis
XB-GENE-961263
I
0.815
HHAL002529-PA
Halyomorpha halys
HHAL002529-PA
I
0.815
CLEC004566
Cimex lectularius
CLEC004566
I
0.815
Sakowv30026333m.g
Saccoglossus kowalevskii
Sakowv30026333m.g
I
0.815
yy1.S
Xenopus laevis
XB-GENE-961267
I
0.815
AALB001578
Anopheles albimanus
AALB001578
I
0.815
LLOJ009958
Lutzomyia longipalpis
LLOJ009958
I
0.815
PPAI004379
Phlebotomus papatasi
PPAI004379
I
0.815
ASIS015128
Anopheles sinensis
ASIS015128
I
0.815
AMEC007067
Anopheles melas
AMEC007067
I
0.815
AFUN003297
Anopheles funestus
AFUN003297
I
0.815
gw.8.511.1
Branchiostoma floridae
gw.8.511.1
I
0.815
e_gw.8.110.1
Branchiostoma floridae
e_gw.8.110.1
I
0.815
Brh_R004031
Buceros rhinoceros
Brh_R004031
I
0.815
Cflo_10375--XP_392196.2_APIME
Camponotus floridanus
Cflo_10375--XP_392196.2_APIME
I
0.815
Alligator_sinensis_CCG004251.1
Alligator sinensis
Alligator_sinensis_CCG004251.1
I
0.815
Afo_R004638
Aptenodytes forsteri
Afo_R004638
I
0.815
ENSPANG00000009274
Papio anubis
ENSPANG00000009274
I
0.815
Cflo_15890--XP_392196.2_APIME
Camponotus floridanus
Cflo_15890--XP_392196.2_APIME
I
0.815
Gfo_R006742
Geospiza fortis
Gfo_R006742
I
0.815
yakG036002
Bos grunniens
yakG036002
I
0.815
Tal_R000269
Tyto alba
Tal_R000269
I
0.815
Pvit_14266
Pogona vitticeps
Pvit_14266
I
0.815
Myotis_brandtii_YY1_10025332
Myotis brandtii
Myotis_brandtii_YY1_10025332
I
0.815
YQE_09404
Dendroctonus ponderosae
YQE_09404
I
0.815
yy1a
Takifugu rubripes
ENSTRUG00000012579
I
0.815
YY1
Felis catus
ENSFCAG00000024327
I
0.815
YY1
Homo sapiens
ENSG00000100811
D
0.815
yy1a
Gasterosteus aculeatus
ENSGACG00000008573
I
0.815
ENSFALG00000002683
Ficedula albicollis
ENSFALG00000002683
I
0.815
YY2
Echinops telfairi
ENSETEG00000010999
I
0.815
ENSDNOG00000023949
Dasypus novemcinctus
ENSDNOG00000023949
I
0.815
ENSECAG00000005805
Equus caballus
ENSECAG00000005805
I
0.815
ENSGACG00000012595
Gasterosteus aculeatus
ENSGACG00000012595
I
0.815
YY1
Gallus gallus
ENSGALG00000017388
I
0.815
ENSLOCG00000011626
Lepisosteus oculatus
ENSLOCG00000011626
I
0.815
ENSMGAG00000013304
Meleagris gallopavo
ENSMGAG00000013304
I
0.815
ENSLAFG00000032414
Loxodonta africana
ENSLAFG00000032414
I
0.815
yy1a
Oryzias latipes
ENSORLG00000015640
I
0.815
YY1
Gorilla gorilla
ENSGGOG00000026332
I
0.815
ENSGMOG00000010949
Gadus morhua
ENSGMOG00000010949
I
0.815
yy1a
Danio rerio
ENSDARG00000042796
I
0.815
yy1b
Danio rerio
ENSDARG00000027978
I
0.815
DAPPUDRAFT_59123
Daphnia pulex
DAPPUDRAFT_59123
I
0.815
ENSACAG00000013402
Anolis carolinensis
ENSACAG00000013402
I
0.815
CPIJ014689
Culex quinquefasciatus
CPIJ014689
I
0.815
BGIBMGA011179
Bombyx mori
BGIBMGA011179
I
0.815
ACEP14480
Atta cephalotes
ACEP14480
I
0.815
ADAC004141
Anopheles darlingi
ADAC004141
I
0.815
ENSAMEG00000011146
Ailuropoda melanoleuca
ENSAMEG00000011146
I
0.815
ENSAMXG00000006146
Astyanax mexicanus
ENSAMXG00000006146
I
0.815
ENSCJAG00000016853
Callithrix jacchus
ENSCJAG00000016853
I
0.815
ENSCPOG00000020809
Cavia porcellus
ENSCPOG00000020809
I
0.815
YY1
Canis familiaris
ENSCAFG00000017894
I
0.815
YY1
Bos taurus
ENSBTAG00000020819
I
0.815
ENSAMXG00000013302
Astyanax mexicanus
ENSAMXG00000013302
I
0.815
ENSAPLG00000003589
Anas platyrhynchos
ENSAPLG00000003589
I
0.815
YY1
Microcebus murinus
ENSMICG00000006698
I
0.815
ENSGMOG00000011803
Gadus morhua
ENSGMOG00000011803
I
0.815
ENSOANG00000005723
Ornithorhynchus anatinus
ENSOANG00000005723
I
0.815
ENSMPUG00000002931
Mustela putorius furo
ENSMPUG00000002931
I
0.815
ENSNLEG00000000999
Nomascus leucogenys
ENSNLEG00000000999
I
0.815
ENSMODG00000013124
Monodelphis domestica
ENSMODG00000013124
I
0.815
ENSMLUG00000024984
Myotis lucifugus
ENSMLUG00000024984
I
0.815
ENSOCUG00000026938
Oryctolagus cuniculus
ENSOCUG00000026938
I
0.815
Yy1
Mus musculus
ENSMUSG00000021264
D
0.815
YY2
Macaca mulatta
ENSMMUG00000029197
I
0.815
ENSONIG00000020108
Oreochromis niloticus
ENSONIG00000020108
I
0.815
YY2
Oryzias latipes
ENSORLG00000009449
I
0.815
ENSOGAG00000006955
Otolemur garnettii
ENSOGAG00000006955
I
0.815
ENSONIG00000000896
Oreochromis niloticus
ENSONIG00000000896
I
0.815
LCUP013338
Lucilia cuprina
LCUP013338
I
0.813
Cmyd_10012120
Chelonia mydas
Cmyd_10012120
I
0.813
tetur09g00130
Tetranychus urticae
tetur09g00130
I
0.812
tetur09g00290
Tetranychus urticae
tetur09g00290
I
0.812
NEMVEDRAFT_v1g118750
Nematostella vectensis
NEMVEDRAFT_v1g118750
I
0.812
PHUM284920
Pediculus humanus
PHUM284920
I
0.812
Ogr05382
Ophisaurus gracilis
Ogr05382
I
0.810
csin103138
Clonorchis sinensis
csin103138
I
0.810
ENSSSCG00000030818
Sus scrofa
ENSSSCG00000030818
I
0.810
ENSSSCG00000030865
Sus scrofa
ENSSSCG00000030865
I
0.810
YY2
Monodelphis domestica
ENSMODG00000028019
I
0.810
T265_10224
Opisthorchis viverrini
T265_10224
I
0.810
ACYPI007734
Acyrthosiphon pisum
ACYPI007734
I
0.809
YY2
Tupaia belangeri
ENSTBEG00000011527
I
0.807
A_01567
Schistosoma haematobium
A_01567
I
0.805
D915_12088
Fasciola hepatica
D915_12088
I
0.805
Smp_023990
Schistosoma mansoni
Smp_023990
I
0.805
SMTD_0001163901
Schistosoma mattheei
SMTD_0001163901
I
0.805
TRE_0001085901
Trichobilharzia regenti
TRE_0001085901
I
0.805
ECPE_0001146401
Echinostoma caproni
ECPE_0001146401
I
0.805
SCUD_0001683801
Schistosoma curassoni
SCUD_0001683801
I
0.805
SROB_0002127201
Schistosoma rodhaini
SROB_0002127201
I
0.805
TYY2_RAT
Rattus norvegicus
TYY2_RAT
D
0.804
Mbtps2
Mus musculus
ENSMUSG00000046873
I
0.804
Yy2
Mus musculus
ENSMUSG00000091736
I
0.804
ENSDORG00000009642
Dipodomys ordii
ENSDORG00000009642
I
0.803
ENSAMEG00000016465
Ailuropoda melanoleuca
ENSAMEG00000016465
I
0.800
YY2
Erinaceus europaeus
ENSEEUG00000010704
I
0.800
ENSSHAG00000010068
Sarcophilus harrisii
ENSSHAG00000010068
I
0.798
GE14485
Drosophila yakuba
FBgn0232089
I
0.797
pho
Drosophila melanogaster
FBgn0002521
D
0.797
GK13655
Drosophila willistoni
FBgn0215663
I
0.797
GJ12430
Drosophila virilis
FBgn0199672
I
0.797
GH23956
Drosophila grimshawi
FBgn0131413
I
0.797
GM13006
Drosophila sechellia
FBgn0167937
I
0.797
GG16416
Drosophila erecta
FBgn0108648
I
0.797
pho
Drosophila simulans
FBgn0067492
I
0.797
DILT_0000781101
Diphyllobothrium latum
DILT_0000781101
I
0.795
TsM_000985500
Taenia solium
TsM_000985500
I
0.793
HNAJ_0000292901
Hymenolepis nana
HNAJ_0000292901
I
0.793
HmN_000280700
Hymenolepis microstoma
HmN_000280700
I
0.793
ECANG7_03870
Echinococcus canadensis
ECANG7_03870
I
0.793
EmuJ_000476600
Echinococcus multilocularis
EmuJ_000476600
I
0.793
TASK_0000670101
Taenia asiatica
TASK_0000670101
I
0.793
TTAC_0000757501
Hydatigera taeniaeformis
TTAC_0000757501
I
0.793
YY2
Equus caballus
ENSECAG00000014804
I
0.783
MCOS_0000134601
Mesocestoides corti
MCOS_0000134601
I
0.783
GG14036
Drosophila erecta
FBgn0106298
I
0.767
GH16213
Drosophila grimshawi
FBgn0123684
I
0.767
GI13359
Drosophila mojavensis
FBgn0136116
I
0.767
GF24664
Drosophila ananassae
FBgn0101657
I
0.767
GA17456
Drosophila pseudoobscura
FBgn0077467
I
0.767
phol
Drosophila melanogaster
FBgn0035997
D
0.767
GL17968
Drosophila persimilis
FBgn0155571
I
0.767
GM24870
Drosophila sechellia
FBgn0179732
I
0.767
GE21239
Drosophila yakuba
FBgn0238511
I
0.767
GJ13188
Drosophila virilis
FBgn0200414
I
0.767
GK20506
Drosophila willistoni
FBgn0222503
I
0.767
GD12921
Drosophila simulans
FBgn0184646
I
0.767
LCUP010826
Lucilia cuprina
LCUP010826
I
0.765
MDOA004058
Musca domestica
MDOA004058
I
0.765
Aqu1.223280
Amphimedon queenslandica
Aqu1.223280
N
0.765
HelroG64229
Helobdella robusta
HelroG64229
N
0.759